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kcibul authored Dec 17, 2021
1 parent ff251d6 commit 20e7e7e
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Showing 3 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/GvsCreateFilterSet.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ workflow GvsCreateFilterSet {
File? excluded_intervals

String output_file_base_name
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211208/gatk-package-4.2.0.0-446-gac1dc9c-SNAPSHOT-local.jar"
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211217/gatk-package-4.2.0.0-448-gff251d6-SNAPSHOT-local.jar"

File dbsnp_vcf
File dbsnp_vcf_index
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2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/GvsExtractCallset.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ workflow GvsExtractCallset {

String output_file_base_name
String? output_gcs_dir
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211208/gatk-package-4.2.0.0-446-gac1dc9c-SNAPSHOT-local.jar"
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211217/gatk-package-4.2.0.0-448-gff251d6-SNAPSHOT-local.jar"
Int local_disk_for_extract = 150

String fq_samples_to_extract_table = "~{data_project}.~{default_dataset}.~{extract_table_prefix}__SAMPLES"
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2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/GvsImportGenomes.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ workflow GvsImportGenomes {
Int batch_size = 1

Int? preemptible_tries
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211208/gatk-package-4.2.0.0-446-gac1dc9c-SNAPSHOT-local.jar"
File? gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20211217/gatk-package-4.2.0.0-448-gff251d6-SNAPSHOT-local.jar"
String? docker
}

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