Fixing #4807 and #4808

broadinstitute · May 24, 2018 · 581c2e2 · 581c2e2
1 parent 5d0bbf2
commit 581c2e2
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scripts/m2_cromwell_tests/test_m2_wdl_multi.json b/scripts/m2_cromwell_tests/test_m2_wdl_multi.json
@@ -1,6 +1,6 @@
 {
   "Mutect2_Multi.gatk_docker": "__GATK_DOCKER__",
-  "Mutect2_Multi.oncotator_docker": "broadinstitute/oncotator:1.9.7.0",
+  "Mutect2_Multi.oncotator_docker": "broadinstitute/oncotator:1.9.9.0",
   "Mutect2_Multi.intervals": "/home/travis/build/broadinstitute/gatk/scripts/m2_cromwell_tests/interval_list.interval_list",
   "Mutect2_Multi.ref_fasta": "/home/travis/build/broadinstitute/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta",
   "Mutect2_Multi.ref_fai": "/home/travis/build/broadinstitute/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta.fai",
@@ -9,7 +9,7 @@
   "Mutect2_Multi.scatter_count": 2,
   "Mutect2_Multi.run_orientation_bias_filter": true,
   "Mutect2_Multi.run_oncotator": true,
-  "Mutect2_Multi.run_funcotator": false,
+  "Mutect2_Multi.run_funcotator": true,
   "Mutect2_Multi.preemptible_attempts": 2,
   "Mutect2_Multi.artifact_modes": ["G/T", "C/T"],
   "Mutect2_Multi.compress_vcfs": false,