Fix reference path.

broadinstitute · May 13, 2024 · 66d4020 · 66d4020
1 parent d3970e5
commit 66d4020
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/filediagnostics/CRAMIssue8768Analyzer.java b/src/main/java/org/broadinstitute/hellbender/tools/filediagnostics/CRAMIssue8768Analyzer.java
@@ -22,6 +22,7 @@
 import java.io.InputStream;
 import java.io.OutputStream;
 import java.nio.file.Files;
+import java.nio.file.Path;
 import java.util.*;
 
 /**
@@ -68,7 +69,8 @@ public CRAMIssue8768Analyzer(
         this.tsvOutputPath = tsvOutputPath;
         this.mismatchRateThreshold = mismatchRateThreshold;
 
-        referenceSource = new ReferenceSource(referencePath.toPath());
+        final Path rPath = referencePath.toPath();
+        referenceSource = new ReferenceSource(rPath);
         try {
             outputStream = Files.newOutputStream(this.outputPath.toPath());
         } catch (final IOException e) {