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VS-430 Remove YNG status from vds (#8861)
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* remove the field 'yng_status' from the variant_data as_vqsr status dict of structs.
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gbggrant committed Jun 6, 2024
1 parent 9a0172d commit ae455fc
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1 change: 1 addition & 0 deletions scripts/variantstore/wdl/extract/import_gvs.py
Original file line number Diff line number Diff line change
Expand Up @@ -396,6 +396,7 @@ def convert_array_with_id_keys_to_dense_array(arr, ids, drop=[]):
hl.if_else(is_snp, vd.truth_sensitivity_snp_threshold, vd.truth_sensitivity_indel_threshold),
True))
)
vd = vd.annotate_rows(as_vqsr=vd.as_vqsr.map_values(lambda value: value.drop('yng_status')))

lgt = vd.LGT
la = vd.LA
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