Simplify HaplotypeBAMWriter code. #944#5122

Merged

cmnbroad merged 9 commits intomasterfrom kpv_#944

Aug 30, 2018

+67-184

Commits on Aug 16, 2018

Commits on Aug 17, 2018

Attempt to fix #944 .
kvinter1
committed

Commits on Aug 22, 2018

Commits on Aug 28, 2018

Reverted back to HaplotypeBAMDestination as abstract super and the existence of SAMFileDestination as its subclass. Kept the consolidation of HaplotypeBAMWriter and its subclasses (AllHaplotypeBAMW…
kvinter1
committed

Commits on Aug 30, 2018