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Add "PASS" filter line for ApplyVQSR and FilterMutectCalls #6436

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merged 2 commits into from
Feb 6, 2020
Merged

Add "PASS" filter line for ApplyVQSR and FilterMutectCalls #6436

merged 2 commits into from
Feb 6, 2020

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ldgauthier
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Closes #6426

davidbenjamin
davidbenjamin approved these changes Feb 3, 2020
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I never knew this was necessary. Given that it is, this looks like the correct fix to me.

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gatk-bot commented Feb 3, 2020 •
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Travis reported job failures from build 28947
Failures in the following jobs:

Test Type JDK Job ID Logs
integration oraclejdk8 28947.11 logs
integration openjdk11 28947.12 logs
integration openjdk8 28947.2 logs

@davidbenjamin davidbenjamin self-assigned this Feb 4, 2020
@ldgauthier ldgauthier force-pushed the ldg_passFilterMutectCalls branch from 451c99c to 582ebcc Compare February 4, 2020 20:20
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gatk-bot commented Feb 4, 2020 •
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Travis reported job failures from build 28980
Failures in the following jobs:

Test Type JDK Job ID Logs
integration openjdk11 28980.12 logs
integration openjdk8 28980.2 logs

@ldgauthier ldgauthier merged commit 6fb30ed into master Feb 6, 2020
@ldgauthier ldgauthier deleted the ldg_passFilterMutectCalls branch February 6, 2020 15:20
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Successfully merging this pull request may close these issues.

Header is missing description for FILTER-PASS
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