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eliminate obsolete cram to bam conversion in M2 WDL #6970

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merged 1 commit into from
Jan 28, 2021

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davidbenjamin
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Closes #5896. @fleharty more technical debt for your review

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Looks good to me.

@@ -27,8 +27,8 @@ version 1.0
##
## ** Primary inputs **
## ref_fasta, ref_fai, ref_dict: reference genome, index, and dictionary
## tumor_bam, tumor_bam_index: BAM and index for the tumor sample
## normal_bam, normal_bam_index: BAM and index for the normal sample
## tumor_reas, tumor_reads_index: BAM and index for the tumor sample
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tumor_reads

@davidbenjamin davidbenjamin merged commit 05e6902 into master Jan 28, 2021
@davidbenjamin davidbenjamin deleted the db_m2_wdl_cram branch January 28, 2021 19:13
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Remove the CRAM conversion from M2 WDL
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