Training data mode in Mutect2 to prepare for Mutect3 #7109
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
takutosato
approved these changes
Mar 8, 2021
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerSampleHC.java
Outdated
Show resolved
Hide resolved
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AssemblyComplexity.java
Show resolved
Hide resolved
src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java
Outdated
Show resolved
Hide resolved
| } | ||
|
|
||
| /** | ||
| * Annotates the given variant context - adds all annotations that satisfy the predicate. |
There was a problem hiding this comment.
Since we have the docs here, we should delete the (identical) docs above the other annotateContext() method.
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotation.java
Outdated
Show resolved
Hide resolved
...in/java/org/broadinstitute/hellbender/tools/walkers/annotator/OrientationBiasReadCounts.java
Show resolved
Hide resolved
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/FeaturizedReadSets.java
Show resolved
Hide resolved
davidbenjamin
force-pushed
the
db_m3_training_mode
branch
from
fbd1f08 to
29e658c
Compare
davidbenjamin
force-pushed
the
db_m3_training_mode
branch
from
885ccdc to
82ec5fb
Compare
davidbenjamin
force-pushed
the
db_m3_training_mode
branch
from
1b74432 to
283dc0c
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
@takutosato Could you look at this?