-
Notifications
You must be signed in to change notification settings - Fork 597
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Rename "metadata" table to "sample_info" table, fix vet schema #7196
Conversation
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Looks great, very thorough. I'm assuming it runs :D
One other place to look through would be example .sh
files or .md
where we have command lines.
dont we also need to update |
875d324
to
60bd7c5
Compare
specops issue #265 https://github.com/broadinstitute/dsp-spec-ops/issues/265
in addition to renaming the metadata table (in both CreateVariantIngestFiles tool and ImportGenomes wdl), this PR:
this was tested by running ImportGenomes.wdl in Terra and the sample_info table gets created & populated as expected.
note: ImportArrays.wdl and array tooling were not updated