Update StrandBiasBySample documentation #7283
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This documentation mentions a caveat about not being able to create the annotation with variant annotator, however, users have expressed confusion about not being able to find their StrandBiasBySample (SB) annotations in their final VCFs after using GenotypeGVCFs... which it should not do. There is more information about this on the forum: https://gatk.broadinstitute.org/hc/en-us/community/posts/360077332392-StrandBiasBySample-SB-in-vcf?page=1#community_comment_360015331011
droazen
changed the title
droazen
changed the base branch from
dc_update_strandbiasbysample.java_210601
to
master
clarification
|
@derekca This PR was updated by @ldgauthier to add an additional clarification |
droazen
approved these changes
Nov 1, 2021
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This documentation mentions a caveat about not being able to create the annotation with variant annotator, however, users have expressed confusion about not being able to find their StrandBiasBySample (SB) annotations in their final VCFs after using GenotypeGVCFs... which it should not do.
There is more information about this on the forum: https://gatk.broadinstitute.org/hc/en-us/community/posts/360077332392-StrandBiasBySample-SB-in-vcf?page=1#community_comment_360015331011