remove calls to filter Numt and low het sites #7325
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meganshand
reviewed
Jun 21, 2021
| @@ -11,7 +11,6 @@ workflow AlignAndCall { | |||
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| input { | |||
| File unmapped_bam | |||
| Float? autosomal_coverage | |||
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Can you also delete the max_low_het_sites workflow input?
| @@ -15,7 +15,6 @@ workflow MitochondriaPipeline { | |||
| File wgs_aligned_input_bam_or_cram | |||
| File wgs_aligned_input_bam_or_cram_index | |||
| String contig_name = "chrM" | |||
| Float autosomal_coverage = 30 | |||
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max_low_het_sites should be deleted from this WDL too.
meganshand
approved these changes
Jun 21, 2021
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numt and low het filters are no longer being used