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Small improvements to the pileup arguments #8050

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merged 1 commit into from
Dec 23, 2022

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yfarjoun
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  • Added minValue and maxValue to the pileup arguments
  • fixed documentation for pileup arguments to avoid using "percentage"

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codecov bot commented Oct 11, 2022

Codecov Report

Merging #8050 (a234002) into master (633aa4a) will increase coverage by 0.001%.
The diff coverage is n/a.

Additional details and impacted files
@@               Coverage Diff               @@
##              master     #8050       +/-   ##
===============================================
+ Coverage     86.641%   86.642%   +0.001%     
+ Complexity     38962     38959        -3     
===============================================
  Files           2336      2336               
  Lines         182731    182731               
  Branches       20066     20067        +1     
===============================================
+ Hits          158320    158321        +1     
- Misses         17367     17368        +1     
+ Partials        7044      7042        -2     
Impacted Files Coverage Δ
...otypecaller/PileupDetectionArgumentCollection.java 100.000% <ø> (ø)
...nder/utils/runtime/StreamingProcessController.java 66.818% <0.000%> (-0.455%) ⬇️
...itute/hellbender/tools/LocalAssemblerUnitTest.java 92.448% <0.000%> (ø)
.../hellbender/utils/python/PythonUnitTestRunner.java 78.689% <0.000%> (+3.279%) ⬆️

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@jamesemery jamesemery left a comment

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Thank you @yfarjoun. I should have been more careful in defining these arguments in the first place...

- fixed documentation for pileup arguments to avoid using "percentage"
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I'm forcing this to rerun tests so we can merge it.

@lbergelson lbergelson merged commit 16fc4f1 into master Dec 23, 2022
@lbergelson lbergelson deleted the yf_fix_pileup_arguments branch December 23, 2022 22:24
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5 participants