fix situation with fasta headers with spaces being truncated

broadinstitute · Sep 18, 2024 · 42aa7c1 · 42aa7c1
1 parent c7c2afd
commit 42aa7c1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/util/file.py b/util/file.py
@@ -651,7 +651,7 @@ def write_fasta_with_sanitized_ids(fasta_in, out_filepath):
  fasta_out = FastaIO.FastaWriter(handle, wrap=None)
  fasta_out.write_header()
  for record in SeqIO.parse(fasta_in, "fasta"):
- record.id=sanitize_id_for_sam_rname(record.id)
+ record.id=sanitize_id_for_sam_rname(record.description)
  fasta_out.write_record(record)
  print("out_filepath",out_filepath)
  print("os.path.dirname(out_filepath)",os.path.dirname(out_filepath))