Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add tarball merger #853

Merged
merged 15 commits into from
Jul 23, 2018
Merged

add tarball merger #853

merged 15 commits into from
Jul 23, 2018

Commits on Jul 19, 2018

  1. add tarball merger 

    add a new utility function that merges separate tarballs into one tarball data can be piped in and/or out
    @tomkinsc
    tomkinsc committed Jul 19, 2018
    Configuration menu
    Copy the full SHA
    026a970 View commit details
    Browse the repository at this point in the history

  2. add simple unit test for tarball merger

    @tomkinsc
    tomkinsc committed Jul 19, 2018
    Configuration menu
    Copy the full SHA
    802ac5e View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into ct-add-tarball-merger

    @tomkinsc
    tomkinsc authored Jul 19, 2018
    Configuration menu
    Copy the full SHA
    fc09e3c View commit details
    Browse the repository at this point in the history

  4. merge_tarballs relative path correction for in-mem directory repack

    @tomkinsc
    tomkinsc committed Jul 19, 2018
    Configuration menu
    Copy the full SHA
    511baa9 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'ct-add-tarball-merger' of ssh://github.com/broadinstitu… 

    …te/viral-ngs into ct-add-tarball-merger
    @tomkinsc
    tomkinsc committed Jul 19, 2018
    Configuration menu
    Copy the full SHA
    8238e64 View commit details
    Browse the repository at this point in the history

Commits on Jul 20, 2018

  1. add "--cov file_utils" to PYTEST_ADDOPTS

    @tomkinsc
    tomkinsc committed Jul 20, 2018
    Configuration menu
    Copy the full SHA
    ecbbaf9 View commit details
    Browse the repository at this point in the history

  2. add to docs

    @tomkinsc
    tomkinsc committed Jul 20, 2018
    Configuration menu
    Copy the full SHA
    ff15ace View commit details
    Browse the repository at this point in the history

  3. add test for extracted files; bugfix extracted files given abs path

    @tomkinsc
    tomkinsc committed Jul 20, 2018
    Configuration menu
    Copy the full SHA
    e2c7b1b View commit details
    Browse the repository at this point in the history

  4. incorporate changes following code review by @dpark01 and @yesimon

    @tomkinsc
    tomkinsc committed Jul 20, 2018
    Configuration menu
    Copy the full SHA
    1007dad View commit details
    Browse the repository at this point in the history

Commits on Jul 21, 2018

  1. add additional tests for tarball_merger; prevent dummy '-' file from … 

    …being created when stdout is used
    @tomkinsc
    tomkinsc committed Jul 21, 2018
    Configuration menu
    Copy the full SHA
    772e117 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into ct-add-tarball-merger

    @tomkinsc
    tomkinsc authored Jul 21, 2018
    Configuration menu
    Copy the full SHA
    ad6fae4 View commit details
    Browse the repository at this point in the history

  3. cruft removal

    @tomkinsc
    tomkinsc committed Jul 21, 2018
    Configuration menu
    Copy the full SHA
    88b3fd8 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'ct-add-tarball-merger' of ssh://github.com/broadinstitu… 

    …te/viral-ngs into ct-add-tarball-merger
    @tomkinsc
    tomkinsc committed Jul 21, 2018
    Configuration menu
    Copy the full SHA
    204d98a View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into ct-add-tarball-merger

    @tomkinsc
    tomkinsc authored Jul 21, 2018
    Configuration menu
    Copy the full SHA
    c912c02 View commit details
    Browse the repository at this point in the history

Commits on Jul 23, 2018

  1. Merge branch 'master' into ct-add-tarball-merger

    @tomkinsc
    tomkinsc authored Jul 23, 2018
    Configuration menu
    Copy the full SHA
    b9f356d View commit details
    Browse the repository at this point in the history