preserve Unmatched.bam in illumina_demux WDL task #887
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This PR includes changes to preserve the
Unmatched.bamfile following executions of theillumina_demuxtask in the WDL pipelines, to be consistent with prior behavior of the DNAnexus pipelines. TheUnmatched.bamfile is treated as a separate task output,unmatched_reads_bam, so downstream tasks (kraken, de novo assembly, etc.) are not run on theUnmatched.bamby default (since it can often be quite large).