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add fallback method for bioconda wrapper of gatk v3 #902

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merged 1 commit into from
Dec 5, 2018

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@tomkinsc tomkinsc commented Dec 4, 2018

add install method for gatk executable as well as gatk3 as provided by bioconda. The current recipe uses gatk3, however a new install received a package build with the older gatk executable name (some bioconda packages are currently in build flux). This adds a fallback method so either executable supplied by bioconda will work.

add install method for `gatk` executable as well as `gatk3` as provided by bioconda.  The current [recipe](https://github.com/bioconda/bioconda-recipes/blob/master/recipes/gatk/build.sh) uses gatk3, however a new install received a package build with the older `gatk` executable name (some bioconda packages are currently in build flux). This adds a fallback method so either executable supplied by bioconda will work.
@tomkinsc tomkinsc merged commit 969a634 into master Dec 5, 2018
@tomkinsc tomkinsc deleted the ct-gatk3-exec-fallback branch December 5, 2018 01:10
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