v1.7.0

New:

• add parser_bwamem_idxstats, which takes reads, aligns to reference with BWA-MEM and performs samtools idxstats

Updates:

• easy-deploy now uses own conda install (fix)
• samtools sort is now multithreaded (improved performance)
• bam->fastq conversions now use Samtools rather than Picard (improved performance)
• Update samtools to 1.3.1
• --commonBarcodes is now specified by default in illumina_demux call in Snakemake demux.rules
• more robust handling of barcode files with extraneous end-of-line spaces