Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

broadinstitute / viral-pipelines Public

Notifications You must be signed in to change notification settings
Fork 27
Star 62

Code
Issues 23
Pull requests 15
Discussions
Actions
Projects
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Discussions
Actions
Projects
Security
Insights

documentation build fixes for ReadTheDocs#450

Merged

tomkinsc merged 21 commits intomasterbroadinstitute/viral-pipelines:masterfrom ct-docs-build-debuggingbroadinstitute/viral-pipelines:ct-docs-build-debuggingCopy head branch name to clipboard

Jan 18, 2023

+41-14

Conversation Commits21 (21)Checks Files changed

Commits

Commits on Jan 18, 2023

pin jinja2<3.1
tomkinsc
authored
override sphinx pinning done by RTD
tomkinsc
authored
(debugging) omit jinja2 pinning
tomkinsc
authored
list jinja2 in requirements but without a version pin
tomkinsc
authored
set sphinx builder to "html" in the RTD config
tomkinsc
authored
omit sphinx autodoc since this repo is for wdls not pythons
tomkinsc
authored
Update requirements.txt
tomkinsc
authored
Update requirements.txt
tomkinsc
authored
bump RTD python 3.6->3.8
tomkinsc
authored
comment out wdl_aid import in sphinx config
tomkinsc
committed
try always explicitly specifying the sphinx_rtd_theme
tomkinsc
committed
revert toggle of RTD sphinx theme based on build environment
tomkinsc
committed
pass through error code on build-docs.sh failure
tomkinsc
committed
invert
tomkinsc
committed
remove whitespace before sphinx config imports
tomkinsc
committed
capture and print wdl-aid output upon error
tomkinsc
committed
pip freeze after installing docs dependencies on GH actions
tomkinsc
committed
bump python to 3.11 for RTD and GH Actions doc builds
tomkinsc
committed
explicitly pin most of the documentation build requirements
tomkinsc
committed
roll back python used for doc builds to 3.8
tomkinsc
committed
add back sphinx autodoc extension
tomkinsc
committed

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.