-
Notifications
You must be signed in to change notification settings - Fork 96
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Fix join barcode step for Opossum #1397
base: develop
Are you sure you want to change the base?
Changes from all commits
File filter
Filter by extension
Conversations
Jump to
Diff view
Diff view
There are no files selected for viewing
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -317,7 +317,7 @@ task JoinMultiomeBarcodes { | |
echo "Starting bgzip" | ||
bgzip "~{atac_fragment_base}.sorted.tsv" | ||
echo "Starting tabix" | ||
tabix -s 1 -b 2 -e 3 "~{atac_fragment_base}.sorted.tsv.gz" | ||
tabix -s 1 -b 2 -e 3 -C "~{atac_fragment_base}.sorted.tsv.gz" | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. @khajoue2 Do we know if this is still compatible with ArchR import? We only added tabix in to make the outputs compatible, so if it isn't directly compatible, we might want to flag it to Multiome group. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. This information wasn't clearly specified in ArchR's public documentation, we can do some downstream check. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. We can make a note "If incompatible, explore alternative solutions e.g., chromosome splitting." |
||
|
||
>>> | ||
|
||
|
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.