Releases: broadinstitute/warp
Releases · broadinstitute/warp
SmartSeq2SingleSample_v5.1.21
5.1.21
2024-09-11 (Date of Last Commit)
- Updated warp-tools docker which added create_h5ad_snss2.py to the docker image. This change does not affect the SmartSeq2SingleSample pipeline
SlideSeq_v3.4.2
3.4.2
2024-09-24 (Date of Last Commit)
- Added a python implementation of DoubletFinder to calculate doublet scores in gene expression data; this does not impact the slideseq workflow
PairedTag_v1.7.0
1.7.0
2024-09-24 (Date of Last Commit)
- Added a python implementation of DoubletFinder to calculate doublet scores in gene expression data; percent doublets are now available as a library-level metric and individual doublet scores for cell barcodes are in the h5ad
- Updated gene_names in the final h5ad to be unique
Optimus_v7.7.0
7.7.0
2024-09-24 (Date of Last Commit)
- Added a python implementation of DoubletFinder to calculate doublet scores in gene expression data; percent doublets are now available as a library-level metric and individual doublet scores for cell barcodes are in the h5ad
- Updated gene_names in the final h5ad to be unique
Multiome_v5.7.0
5.7.0
2024-09-24 (Date of Last Commit)
- Added a python implementation of DoubletFinder to calculate doublet scores in gene expression data; percent doublets are now available as a library-level metric and individual doublet scores for cell barcodes are in the h5ad
- Updated gene_names in the final h5ad to be unique
MultiSampleSmartSeq2_v2.2.22
2.2.22
2024-09-11 (Date of Last Commit)
- Updated warp-tools docker which added create_h5ad_snss2.py to the docker image. This change does not affect the MultiSmartSeq2 pipeline
MultiSampleSmartSeq2SingleNucleus_v2.0.1
2.0.1
2024-09-24 (Date of Last Commit)
- Added a python implementation of DoubletFinder to calculate doublet scores in gene expression data; this does not affect the snSS2 workflow
JointGenotyping_v1.7.1
1.7.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling
- If target interval list is provided for filtering, the documentation in the header will be clearer
- If VETS is enabled, the SCORE annotation will be added to all output variants (even hard filtered sites)
JointGenotypingByChromosomePartTwo_v1.5.1
1.5.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling; this has no effect on this pipeline
JointGenotypingByChromosomePartOne_v1.5.1
1.5.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling; this has no effect on this pipeline