Releases: broadinstitute/warp
Releases · broadinstitute/warp
ExternalExomeReprocessing_develop
3.3.1
2024-09-17 (Date of Last Commit)
- Updated DRAGEN aligner parameters to fix non-determinism; this does not affect the Exome workflow
ExomeReprocessing_develop
3.3.1
2024-09-17 (Date of Last Commit)
- Updated DRAGEN aligner parameters to fix non-determinism; this does not affect the exome workflow
ExomeGermlineSingleSample_develop
3.2.1
2024-09-17 (Date of Last Commit)
- Updated DRAGEN aligner parameters to fix non-determinism; this does not affect the Exome workflow
UltimaGenomicsJointGenotyping_develop
1.2.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling; this has no effect on this pipeline
JointGenotyping_develop
1.7.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling
- If target interval list is provided for filtering, the documentation in the header will be clearer
- If VETS is enabled, the SCORE annotation will be added to all output variants (even hard filtered sites)
JointGenotypingByChromosomePartTwo_develop
1.5.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling; this has no effect on this pipeline
JointGenotypingByChromosomePartOne_develop
1.5.1
2024-09-10 (Date of Last Commit)
- Update to BGE filtering options in JointCalling; this has no effect on this pipeline
SmartSeq2SingleSample_develop
5.1.21
2024-09-11 (Date of Last Commit)
- Updated warp-tools docker which added create_h5ad_snss2.py to the docker image. This change does not affect the SmartSeq2SingleSample pipeline
MultiSampleSmartSeq2_develop
2.2.22
2024-09-11 (Date of Last Commit)
- Updated warp-tools docker which added create_h5ad_snss2.py to the docker image. This change does not affect the MultiSmartSeq2 pipeline
WholeGenomeReprocessing_v3.3.0
3.3.0
2024-09-06 (Date of Last Commit)
- Updated to GATK version 4.6.0.0
- Updated version drops some low quality sites from VCFs; if reblocking is enabled, the DP annotation in some ref blocks will change due to the change in HaplotypeCaller