Testing scripts for CDKAM and other tools
This tool installs CDKAM and Kraken2 inside the current folder. Then, it generates simulated read, run both CDKAM and Kraken2. After that, the classification results are compared with the original taxonomy at Genus and Species level.
The database contains archaea, viral and fungi.
(1) Install
./install_CDKAM.sh
./install_kraken2.sh
./pre-install.sh
(2) Testing:
./run.sh readLength errorRate