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only report insertion scores when donor gain or acceptor gain is > 0.…

bw2pushed 1 commit to master • 6047420…c7dbd93 • 
on Nov 13, 2024

add SCORES_FOR_INSERTED_BASES for all insertion variants with non-zer…

bw2pushed 1 commit to master • b5a0d8a…6047420 • 
on Nov 13, 2024

renamed SCORES_OF_INSERTED_BASES to SCORES_FOR_INSERTED_BASES

bw2pushed 1 commit to master • b04c13c…b5a0d8a • 
on Nov 12, 2024

finished adding SCORES_OF_INSERTED_BASES output

bw2pushed 1 commit to master • 3cb1520…b04c13c • 
on Nov 12, 2024

added SCORES_OF_INSERTED_BASES to output to address broadinstitute/Sp…

bw2pushed 1 commit to master • 4a39426…3cb1520 • 
on Nov 11, 2024

disable logging based on https://www.tensorflow.org/api_docs/python/t…

bw2pushed 1 commit to master • aecd27c…4a39426 • 
on Oct 8, 2024

comment out __version__ so that spliceai can be imported directly fro…

bw2pushed 1 commit to master • de52f54…aecd27c • 
on Mar 4, 2024

switch from pyfaidx to pyfastx to allow bgzipped ref fasta

bw2pushed 1 commit to master • 7b09404…de52f54 • 
on Mar 1, 2024

refactor output number format

bw2pushed 1 commit to master • d073b73…7b09404 • 
on Sep 15, 2023

round results to 2 decimal places

bw2pushed 1 commit to master • 2446c70…d073b73 • 
on Sep 13, 2023

fixed VCF output. Added transript cache which speeds up processing of…

bw2pushed 1 commit to master • b1bc235…2446c70 • 
on Sep 13, 2023

fixed genomic coords calculation for minus strand transcripts

bw2pushed 1 commit to master • f00fe9b…b1bc235 • 
on Sep 12, 2023

renamed 'SYMBOL' field to 'NAME' and adjusted logic for which positio…

bw2pushed 1 commit to master • df04cc5…f00fe9b • 
on Sep 11, 2023

changed ALL_NON_ZERO_SCORES format to simplify parsing

bw2pushed 1 commit to master • d5b6d18…df04cc5 • 
on Sep 7, 2023

reverse genomic coords for minus strand

bw2pushed 1 commit to master • a7f0064…d5b6d18 • 
on Sep 5, 2023

fixed genomic_coordinates off-by-one error, added STRAND field

bw2pushed 1 commit to master • 0ba5504…a7f0064 • 
on Sep 5, 2023

convert numpy types to built-in python types to avoid downstream erro…

bw2pushed 2 commits to master • 8034f18…0ba5504 • 
on Sep 4, 2023

return all scores from get_delta_scores

bw2created get_all_scores • 05c4cc8 • 
on May 11, 2023

merged PR Illumina#92 - output raw scores in VCF

bw2pushed 2 commits to master • 1dcd441…8034f18 • 
on May 11, 2023

Added support and testing for MNPs

bw2pushed 1 commit to master • b083eb5…1dcd441 • 
on May 10, 2023