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How can kinase targets be predicted by WebGestaltR function #11

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QifengOu opened this issue Sep 15, 2021 · 1 comment

QifengOu commented Sep 15, 2021

just like to perform the enrichment analysis, How can kinase targets be predicted by WebGestaltR function. for example:

rankFile <- system.file("extdata", "GeneRankList.rnk", package="WebGestaltR")
outputDirectory <- getwd()
enrichResult <- WebGestaltR(enrichMethod="GSEA", organism="hsapiens",
enrichDatabase="pathway_KEGG", interestGeneFile=rankFile,
interestGeneType="genesymbol", sigMethod="top", topThr=10, minNum=5,
outputDirectory=outputDirectory)

We change the parameters enrichDatabase="pathway_KEGG" to enrichDatabase='kinases_target'.

Also, can you provide a detailed code example?
Think you very much!!

Author

QifengOu commented Sep 15, 2021

I want to download the GMT file used by the website tool. Could you please provide the download link or gmt file

iblacksand added a commit that referenced this issue


          Fix issue #11 by reducing font size (#13)

0fdbd54

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