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cBioPortal · Jun 2, 2023 · 1ab4589 · 1ab4589
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commit 1ab4589
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Showing 7 changed files with 261 additions and 264 deletions.
diff --git a/...t/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_DBS.txt b/...t/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_DBS.txt
diff --git a/...st/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_ID.txt b/...st/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_ID.txt
diff --git a/...t/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_SBS.txt b/...t/local/studies/lgg_ucsf_2014_test_generic_assay/data_mutational_signature_counts_SBS.txt
diff --git a/...t/local/studies/lgg_ucsf_2014_test_generic_assay/meta_mutational_signature_counts_SBS.txt b/...t/local/studies/lgg_ucsf_2014_test_generic_assay/meta_mutational_signature_counts_SBS.txt
@@ -5,6 +5,6 @@ datatype: LIMIT-VALUE
 stable_id: mutational_signature_counts_SBS
 profile_name: mutational signature counts SBS
 profile_description: profile for count value of mutational signatures, generated using tempoSig
-data_filename: data_mutational_signature_count_SBS.txt
+data_filename: data_mutational_signature_counts_SBS.txt
 show_profile_in_analysis_tab: false
 generic_entity_meta_properties: NAME
diff --git a/src/pages/patientView/PatientViewPageUtils.tsx b/src/pages/patientView/PatientViewPageUtils.tsx
@@ -68,6 +68,7 @@ export function retrieveMutationalSignatureMap(
     inputMetaData: GenericAssayMeta[]
 ): MutationalSignatureLabelMap[] {
     const mappedData = inputMetaData.map((metaData: GenericAssayMeta) => {
+        console.log(metaData);
         const nameSig: string =
             'MUTATION_TYPE' in metaData.genericEntityMetaProperties
                 ? metaData.genericEntityMetaProperties['MUTATION_TYPE']
@@ -88,6 +89,7 @@ export function retrieveMutationalSignatureMap(
             name: mutNameSig,
         };
     });
+    console.log(mappedData);
     return mappedData;
 }
 
@@ -113,7 +115,6 @@ export function createMutationalCountsObject(
                 signatureLabelMap
                     .filter(obj => obj.stableId === count.stableId)
                     .map(obj => obj.name)[0] || '';
-
             result.push(mutationalSignatureChartData);
         }
     }

diff --git a/src/pages/patientView/mutationalSignatures/MutationalSignatureBarChart.tsx b/src/pages/patientView/mutationalSignatures/MutationalSignatureBarChart.tsx
@@ -224,7 +224,7 @@ export default class MutationalBarChart extends React.Component<
                         centerOfBoxes[i].props.x +
                         0.5 * centerOfBoxes[i].props.width
                     }
-                    y={35}
+                    y={37}
                     width={this.props.width}
                     text={item.category}
                     style={{ fontSize: '10px' }}

diff --git a/src/shared/lib/GenericAssayUtils/MutationalSignaturesUtils.tsx b/src/shared/lib/GenericAssayUtils/MutationalSignaturesUtils.tsx
@@ -73,10 +73,6 @@ export function getVersionOptions(versions: string[]) {
 }
 
 export function getSampleOption(sample: string) {
-    console.log({
-        label: 'Sample ' + sample,
-        value: sample,
-    });
     return {
         label: 'Sample ' + sample,
         value: sample,