revert colors.ts changes and add callback to change Mutated vs Wild T…

…ype pie chart
cBioPortal · Apr 5, 2024 · 62abd1e · 62abd1e
1 parent 94f9f9c
commit 62abd1e
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Showing 2 changed files with 22 additions and 4 deletions.
diff --git a/src/pages/studyView/StudyViewUtils.tsx b/src/pages/studyView/StudyViewUtils.tsx
@@ -70,7 +70,13 @@ import {
     stringListToIndexSet,
     toPromise,
 } from 'cbioportal-frontend-commons';
-import { DEFAULT_NA_COLOR, getClinicalValueColor } from 'shared/lib/Colors';
+import {
+    CLI_NO_COLOR,
+    CLI_YES_COLOR,
+    DEFAULT_NA_COLOR,
+    DEFAULT_UNKNOWN_COLOR,
+    getClinicalValueColor,
+} from 'shared/lib/Colors';
 import { StudyViewComparisonGroup } from '../groupComparison/GroupComparisonUtils';
 import styles from './styles.module.scss';
 import { getGroupParameters } from 'pages/groupComparison/comparisonGroupManager/ComparisonGroupManagerUtils';
@@ -1919,6 +1925,19 @@ export function transformMutatedType(type: string): string {
     return capitalizedWords.join(' ');
 }
 
+export function getMutationColorByCategorization(type: string): string {
+    switch (type) {
+        case 'Mutated':
+            return CLI_YES_COLOR;
+        case 'Not Mutated':
+            return CLI_NO_COLOR;
+        case 'Not Profiled':
+            return DEFAULT_NA_COLOR;
+        default:
+            return DEFAULT_UNKNOWN_COLOR;
+    }
+}
+
 export function getDefaultChartTypeByClinicalAttribute(
     clinicalAttribute: ClinicalAttribute
 ): ChartType | undefined {
@@ -4150,6 +4169,8 @@ export async function invokeGenomicDataCount(
         };
         result = await internalClient.fetchMutationDataCountsUsingPOST(params);
         getDisplayedValue = transformMutatedType;
+        getDisplayedColor = (value: string) =>
+            getMutationColorByCategorization(transformMutatedType(value));
     } else {
         result = await internalClient.fetchGenomicDataCountsUsingPOST(params);
         getDisplayedValue = getCNAByAlteration;

diff --git a/src/shared/lib/Colors.ts b/src/shared/lib/Colors.ts
@@ -119,9 +119,6 @@ export let RESERVED_CLINICAL_VALUE_COLORS: { [value: string]: string } = {
     // OTHER: MUT_COLOR_OTHER,
     'wild type': DEFAULT_GREY,
     'no mutation': DEFAULT_GREY,
-    mutated: CLI_YES_COLOR,
-    not_mutated: CLI_NO_COLOR,
-    not_profiled: DEFAULT_NA_COLOR,
     amplification: CNA_COLOR_AMP,
     gain: CNA_COLOR_GAIN,
     diploid: DEFAULT_GREY,