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Kludge to get lgggbm study overlap detection (other tcga studies are prefixed "lgg") #4455

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merged 1 commit into from
Dec 16, 2022
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Kludge to get lgggbm study overlap detection (other tcga studies are prefixed "lgg") #4455

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13 changes: 9 additions & 4 deletions src/shared/lib/getOverlappingStudies.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -9,10 +9,15 @@ export default function getOverlappingStudies(
(memo, study: CancerStudy) => {
if (/_tcga/.test(study.studyId)) {
// we need to find when root of study name is in duplicate, so strip out the modifiers (pub or pancan)
const initial = study.studyId.replace(
/(_\d\d\d\d|_pub|(_pub\d\d\d\d)|_pan_can_atlas_\d\d\d\d)$/g,
''
);
const initial = study.studyId
.replace(
/(_\d\d\d\d|_pub|(_pub\d\d\d\d)|_pan_can_atlas_\d\d\d\d)$/g,
''
)
// this is a cloodge for a tcga study which does not respect convention of it's siblings with
// which it overlaps
.replace('lgggbm_', 'lgg_');

if (initial) {
if (initial in memo) {
memo[initial].push(study);
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