Update Database Image #6
Workflow file for this run
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| name: Update Database Image | |
| on: | |
| push: | |
| paths: | |
| - 'data/**' | |
| workflow_dispatch: | |
| jobs: | |
| update-database-image: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'cbioportal/cbioportal-test' | |
| env: | |
| DOCKER_REPO: 'cbioportal/cbioportal-dev' | |
| DOCKER_TAG: 'database' | |
| PLATFORMS: 'linux/amd64,linux/arm64' | |
| steps: | |
| - name: Setup upterm session | |
| uses: lhotari/action-upterm@v1 | |
| if: ${{ failure() }} | |
| with: | |
| wait-timeout-minutes: 10 | |
| - name: Testing | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| git clone https://github.com/cBioPortal/cbioportal-docker-compose.git | |
| cd cbioportal-docker-compose | |
| ./init.sh | |
| docker compose up | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Log in to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Set up docker buildx for multi-platform builds | |
| run: | | |
| docker pull docker.io/tonistiigi/binfmt:latest | |
| docker run --rm --privileged docker.io/tonistiigi/binfmt:latest --install all | |
| docker buildx use cbioportal-test > /dev/null || docker buildx create --name cbioportal-test --driver docker-container --use | |
| docker buildx inspect --bootstrap --builder cbioportal-test | |
| - name: Update database dump | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| sh scripts/docker-compose.sh --portal_type=web-and-data | |
| sh utils/check-connection.sh --url=localhost:8080 --interval=5 --max_retries=50 | |
| sh scripts/import-data.sh --seed=./data/seed.sql.gz --schema=./data/cgds.sql --studies=./data/studies | |
| sh scripts/dump-data.sh --url=localhost:8080 --out=database_dump.sql | |
| - name: Push new docker image | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| docker buildx build --push --platform $PLATFORMS --tag $DOCKER_REPO:$DOCKER_TAG --build-arg DUMP_PATH=database_dump.sql --file docker/cbioportal-database.Dockerfile --cache-from type=gha --cache-to type=gha . |