Fix mvn tests

cBioPortal · Jun 12, 2019 · 0b8e796 · 0b8e796
1 parent 623f454
commit 0b8e796
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/persistence/persistence-mybatis/src/test/resources/testSql.sql b/persistence/persistence-mybatis/src/test/resources/testSql.sql
@@ -363,21 +363,21 @@ INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,P
 INSERT INTO clinical_attribute_meta (ATTR_ID,DISPLAY_NAME,DESCRIPTION,DATATYPE,PATIENT_ATTRIBUTE,PRIORITY,CANCER_STUDY_ID) VALUES ('SAMPLE_TYPE','Sample Type','The type of sample (i.e.,normal,primary,met,recurrence).','STRING',0,'1',2);
 
 -- Add genes, genetic entities and structural variants for structural_variant
-INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(19,'GENE');
-INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(20,'GENE');
 INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(21,'GENE');
 INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(22,'GENE');
 INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(23,'GENE');
 INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(24,'GENE');
 INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(25,'GENE');
-
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(57670,'KIAA1549',19,'protein-coding','7q34',12427);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(8031,'NCOA4',20,'protein-coding','10q11.22',4079);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(5979,'RET',21,'protein-coding','10q11.21',6911);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(27436,'EML4',22,'protein-coding','2p21',8357);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(238,'ALK',23,'protein-coding','2p23.2-p23.1',6990);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(7113,'TMPRSS2',24,'protein-coding','21q22.3',6117);
-INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(2078,'ERG',25,'protein-coding','21q22.2',7588);
+INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(26,'GENE');
+INSERT INTO genetic_entity (ID,ENTITY_TYPE) VALUES(27,'GENE');
+
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(57670,'KIAA1549',21,'protein-coding','7q34',12427);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(8031,'NCOA4',22,'protein-coding','10q11.22',4079);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(5979,'RET',23,'protein-coding','10q11.21',6911);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(27436,'EML4',24,'protein-coding','2p21',8357);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(238,'ALK',25,'protein-coding','2p23.2-p23.1',6990);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(7113,'TMPRSS2',26,'protein-coding','21q22.3',6117);
+INSERT INTO gene (ENTREZ_GENE_ID,HUGO_GENE_SYMBOL,GENETIC_ENTITY_ID,TYPE,CYTOBAND,LENGTH) VALUES(2078,'ERG',27,'protein-coding','21q22.2',7588);
 
 INSERT INTO structural_variant (GENETIC_PROFILE_ID, SAMPLE_ID, SITE1_ENTREZ_GENE_ID, SITE1_ENSEMBL_TRANSCRIPT_ID, SITE1_EXON, SITE1_CHROMOSOME, SITE1_POSITION, SITE1_DESCRIPTION,                SITE2_ENTREZ_GENE_ID, SITE2_ENSEMBL_TRANSCRIPT_ID, SITE2_EXON, SITE2_CHROMOSOME, SITE2_POSITION, SITE2_DESCRIPTION,                NCBI_BUILD, DNA_SUPPORT, RNA_SUPPORT, TUMOR_READ_COUNT, TUMOR_VARIANT_COUNT, ANNOTATION,                    EVENT_INFO, COMMENTS,           EXTERNAL_ANNOTATION)
                          VALUES(7,                  1,        57670,                'ENST00000242365',           15,         '7',              138536968,      'KIAA1549-BRAF.K16B10.COSF509_1', 673,                  'ENST00000288602',           10,         '7' ,             140482957,      'KIAA1549-BRAF.K16B10.COSF509_2', 'GRCh37',   'no',        'yes',       100000,           90000,              'KIAA1549-BRAF.K16B10.COSF509', 'Fusion',   'Gain-of-Function', 'COSMIC:COSF509');