Merge pull request #10233 from oplantalech/reference_genome_badge

Create property to show reference genome in study list
cBioPortal · Jun 21, 2023 · 8bf1312 · 8bf1312
2 parents f7189e4 + dbee688
commit 8bf1312
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diff --git a/docs/deployment/customization/portal.properties-Reference.md b/docs/deployment/customization/portal.properties-Reference.md
@@ -167,6 +167,13 @@ If _show\_unauthorized\_studies_ feature has been enabled, a message (template)
 skin.home_page.unauthorized_studies_global_message=
 ```
 
+### Show badge with reference genome
+In instances with hg19 and hg38 studies you can show the reference genome in the home page next to the number of samples. This can be done setting this property to `true` (`false` by default):
+
+```
+skin.home_page.show_reference_genome=
+```
+
 ### Control the appearance of the settings menu in study view and group comparison that controls custom annotation-based filtering
 
 A settings menu that allows the user to filter alterations in study view and group comparison may be used when [custom driver annotations](/File-Formats.md#custom-driver-annotations) were loaded for the study or studies displayed in these sections. This menu will only appear, when setting the property _skin.show\_settings\_menu_ to _true_.

diff --git a/portal/src/main/webapp/config_service.jsp b/portal/src/main/webapp/config_service.jsp
@@ -147,7 +147,8 @@
             "skin.patient_view.structural_variant_table.columns.show_on_init",
             "comparison.categorical_na_values",
             "skin.hide_download_controls",
-            "study_download_url"
+            "study_download_url",
+            "skin.home_page.show_reference_genome"
         };
 
 

diff --git a/src/main/resources/portal.properties.EXAMPLE b/src/main/resources/portal.properties.EXAMPLE
@@ -104,6 +104,8 @@ skin.study_view.link_text=To build your own case set, try out our enhanced Study
 # skin.home_page.show_unauthorized_studies=false
 ## enable this to configure a global message for the studies that are unauthorized; the message can contain placecards like {$.Owner.email} for the studies that have the information in the study tags 
 # skin.home_page.unauthorized_studies_global_message=The study is unauthorized. You need to request access.
+## enable this to show reference genome next to the samples
+# skin.home_page.show_reference_genome=false
 
 setting controlling whether Download tabs and download/copy-to-clipboard controls should be shown
 # skin.hide_download_controls=true