New Mutation data counts per gene endpoint #10559
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…alDataFilter bugs
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src/main/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepository.java
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src/main/java/org/cbioportal/service/impl/MolecularProfileServiceImpl.java
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src/main/java/org/cbioportal/service/impl/MutationServiceImpl.java
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src/main/java/org/cbioportal/service/util/MolecularProfileUtil.java
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src/main/java/org/cbioportal/web/util/StudyViewFilterApplier.java
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src/test/java/org/cbioportal/persistence/mybatis/MutationMyBatisRepositoryTest.java
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…o mutation-data-counts
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PR for cBioPortal/icebox#568
Do mutation data counts by gene specific
Option 1: based on whether the sample is mutated or not
Mutated (the samples with one or more mutations in the gene)
Wild Type (the samples without mutations in the gene)
NA (the samples that were not profiled)
Option 2: based on mutation type
Missense Mutation, Frame Shift Del, Frame Shift Ins, etc...
Implement new MutationDataFilters to filter by above groups