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fix gene panel matrix hyperlink #6037

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May 6, 2019
Merged

fix gene panel matrix hyperlink #6037

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4 changes: 2 additions & 2 deletions docs/File-Formats.md
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Expand Up @@ -560,7 +560,7 @@ The mutation metadata file should contain the following fields:
#### Gene panels for mutation data
Using the `gene_panel` property it is possible to annotate **all samples in the MAF file** as being profiled on the **same** specified gene panel.

Please use the [Gene Panel Matrix file](gene-panel-matrix-file) when:
Please use the [Gene Panel Matrix file](#gene-panel-matrix-file) when:
- Data contains samples that are profiled but no mutations are called. Also please add these to the `_sequenced` case list.
- Multiple gene panels are used to profile the samples in the MAF file.

Expand Down Expand Up @@ -833,7 +833,7 @@ RET<TAB>5979<TAB>center.edu<TAB>SAMPLE_ID_3<TAB>Fusion<TAB>unknown<TAB>yes<TAB>u

#### Gene panels for fusion data
Currently, Fusion events are saved in the same database table as mutation data. Therefore, these must share the same gene panel.
Adding gene panel annotations to samples profiled for fusions can be done with the [Gene Panel Matrix file](gene-panel-matrix-file)
Adding gene panel annotations to samples profiled for fusions can be done with the [Gene Panel Matrix file](#gene-panel-matrix-file)
and adding them to the column for mutations.

## Case Lists
Expand Down