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fixed #799 #805

Merged
merged 18 commits into from
Feb 5, 2016
Merged

fixed #799 #805

merged 18 commits into from
Feb 5, 2016

Commits on Oct 16, 2015

  1. Merge pull request cBioPortal#4 from cBioPortal/hotfix 

    Hotfix
    @n1zea144
    n1zea144 committed Oct 16, 2015
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Commits on Jan 26, 2016

  1. started v1.0.4-SNAPSHOT

    @jjgao
    jjgao committed Jan 26, 2016
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Commits on Jan 28, 2016

  1. Merge remote-tracking branch 'upstream/hotfix' into hotfix

    @n1zea144
    n1zea144 committed Jan 28, 2016
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  2. Changes to support CIS integration

    @n1zea144
    n1zea144 committed Jan 28, 2016
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  3. Merge pull request cBioPortal#797 from n1zea144/hotfix 

    Hotfix
    @n1zea144
    n1zea144 committed Jan 28, 2016
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Commits on Jan 29, 2016

  1. Mark location in DaoMutation where fix for mysql slowdown will go

    @sheridancbio
    sheridancbio committed Jan 29, 2016
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Commits on Feb 1, 2016

  1. fixed cBioPortal#799

    @jjgao
    jjgao committed Feb 1, 2016
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  2. only import human genes

    @jjgao
    jjgao committed Feb 1, 2016
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  3. forgot to add the gene

    @jjgao
    jjgao committed Feb 1, 2016
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Commits on Feb 2, 2016

  1. hide cbiportal column in the mutations table in patient view

    @jjgao
    jjgao committed Feb 2, 2016
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  2. disable the mut v cna plot on patient view

    @jjgao
    jjgao committed Feb 2, 2016
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  3. Performance improvement: avoid large temporary table during DaoMutati… 

    …on.countSamplesWithProteinPosStarts()

- now construct geneId set from proteinPosStarts argument, and use for WHERE clause on table 'mutation'
- previously temporary table before join might include almost all mutations (depending on supplied geneticProfileId argument)
- changed join to an explicit INNER JOIN (from comma operator join)
    @sheridancbio
    sheridancbio committed Feb 2, 2016
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  4. make whitespace and code layout consistent (no semantic changes)

    @sheridancbio
    sheridancbio committed Feb 2, 2016
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  5. Add check for empty argument lists in DaoMutation.countSamplesWithPro… 

    …teinPosStarts()
    @sheridancbio
    sheridancbio committed Feb 2, 2016
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Commits on Feb 5, 2016

  1. Merge pull request cBioPortal#803 from sheridancbio/mysql_slowdown_da… 

    …omutation_fix

Fix DaoMutation call countSamplesWithProteinPosStarts to help with mysql slowdown
    @jjgao
    jjgao committed Feb 5, 2016
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  2. Merge pull request cBioPortal#809 from jjgao/hotfix 

    patient view performance: hide cbioportal column in mutations table & remove mut vs cna plot
    @jjgao
    jjgao committed Feb 5, 2016
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  3. Merge branch 'rc' of https://github.com/cBioPortal/cbioportal into rc

    @jjgao
    jjgao committed Feb 5, 2016
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  4. Merge branch 'hotfix' into rc

    @jjgao
    jjgao committed Feb 5, 2016
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