Merge pull request #2087 from cBioPortal/error_fix

prad_msk_mdanderson_2023: update rna-seq data type
cBioPortal · Oct 24, 2024 · 976b07a · 976b07a
2 parents b226bf6 + 914b9e1
commit 976b07a
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diff --git a/crdc/gdc/acc_tcga_gdc/validation_reports/acc_tcga_gdc-validation.html b/crdc/gdc/acc_tcga_gdc/validation_reports/acc_tcga_gdc-validation.html
diff --git a/crdc/gdc/aml_tcga_gdc/validation_reports/aml_tcga_gdc-validation.html b/crdc/gdc/aml_tcga_gdc/validation_reports/aml_tcga_gdc-validation.html
diff --git a/...mdanderson_2023/data_mrna_seq_v2_rsem.txt → ...sk_mdanderson_2023/data_mrna_seq_fpkm.txt b/...mdanderson_2023/data_mrna_seq_v2_rsem.txt → ...sk_mdanderson_2023/data_mrna_seq_fpkm.txt
diff --git a/...a_seq_v2_rsem_zscores_ref_all_samples.txt → ...mrna_seq_fpkm_zscores_ref_all_samples.txt b/...a_seq_v2_rsem_zscores_ref_all_samples.txt → ...mrna_seq_fpkm_zscores_ref_all_samples.txt
diff --git a/public/prad_msk_mdanderson_2023/meta_mrna_seq_fpkm.txt b/public/prad_msk_mdanderson_2023/meta_mrna_seq_fpkm.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: prad_msk_mdanderson_2023
+stable_id: mrna_seq_fpkm
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: CONTINUOUS
+show_profile_in_analysis_tab: FALSE
+profile_name: mRNA expression (FPKM)
+profile_description: mRNA expression (RNA Seq FPKM)
+data_filename: data_mrna_seq_fpkm.txt
diff --git a/public/prad_msk_mdanderson_2023/meta_mrna_seq_fpkm_zscores_ref_all_samples.txt b/public/prad_msk_mdanderson_2023/meta_mrna_seq_fpkm_zscores_ref_all_samples.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: prad_msk_mdanderson_2023
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: mrna_seq_fpkm_all_sample_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_name: mRNA expression z-scores relative to all samples (log FPKM)
+profile_description: Log-transformed mRNA z-scores compared to expression distribution of all samples (RNA Seq FPKM)
+data_filename: data_mrna_seq_fpkm_zscores_ref_all_samples.txt
diff --git a/public/prad_msk_mdanderson_2023/meta_mrna_seq_v2_rsem.txt b/public/prad_msk_mdanderson_2023/meta_mrna_seq_v2_rsem.txt
diff --git a/public/prad_msk_mdanderson_2023/meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt b/public/prad_msk_mdanderson_2023/meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt