fix: resolve R CMD check issues

- Fix Rd documentation format in peerj32.obj and subset_T2D.obj - Add linda p-value distribution tests - Update .gitignore and other configurations
cafferychen777 · Nov 4, 2024 · 57d9dd0 · 57d9dd0
1 parent 1a2794b
commit 57d9dd0
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Showing 9 changed files with 160 additions and 9 deletions.
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -31,7 +31,7 @@ jobs:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
+        with: 
           extra-packages: any::pkgdown, local::.
           needs: website
 

diff --git a/R/mStat_generate_report_long.R b/R/mStat_generate_report_long.R
@@ -128,6 +128,10 @@
 #' @param pdf.wid Numeric, width of PDF plots in inches, default is 11.
 #' @param pdf.hei Numeric, height of PDF plots in inches, default is 8.5.
 #' @param output.file Character, output PDF report filename (required).
+#' @param output.format A character string specifying the desired output format of the report.
+#' Must be either "pdf" or "html". Default is c("pdf", "html"), which will use the first value ("pdf")
+#' if not explicitly specified. This parameter determines whether the report will be generated as a PDF
+#' or HTML document.
 #'
 #' @return A PDF report containing:
 #'

diff --git a/man/ecam.obj.Rd b/man/ecam.obj.Rd
diff --git a/man/generate_taxa_change_boxplot_pair.Rd b/man/generate_taxa_change_boxplot_pair.Rd
diff --git a/man/generate_taxa_change_heatmap_pair.Rd b/man/generate_taxa_change_heatmap_pair.Rd
diff --git a/man/mStat_generate_report_long.Rd b/man/mStat_generate_report_long.Rd
diff --git a/man/peerj32.obj.Rd b/man/peerj32.obj.Rd
diff --git a/man/subset_T2D.obj.Rd b/man/subset_T2D.obj.Rd
diff --git a/man/subset_pairs.obj.Rd b/man/subset_pairs.obj.Rd