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README model path
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calebclayreagor committed Jul 6, 2023
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Expand Up @@ -35,7 +35,7 @@ python RunDELAY.py [datadir] [outdir] -k [val_fold] [--atac] -p -ft
### 2. Predict gene regulation across all TF-target gene pairs using the fine-tuned model:

```
python RunDELAY.py [datadir] [outdir] -m [.../BEST_WEIGHTS.ckpt] -p -g 1 -bs 1024
python RunDELAY.py [datadir] [outdir] -m [RESULTS/outdir/BEST_WEIGHTS.ckpt] -p -g 1 -bs 1024
```

- DELAY will save the predicted gene-regulation probabilities as a ``tfs x genes`` matrix in ``outdir`` named ``regPredictions.csv``
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