Bump version (in test files too) for release

cancerit · Jun 19, 2015 · 2c6c3cf · 2c6c3cf
1 parent c9f2ce9
commit 2c6c3cf
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Showing 8 changed files with 29 additions and 28 deletions.
diff --git a/MANIFEST b/MANIFEST
@@ -29,6 +29,7 @@ docs/pod_html/Sanger/CGP/Grass/GenomeData/Transcript.html
 docs/pod_html/Sanger/CGP/Grass/VcfContigs.html
 docs/pod_html/Sanger/CGP/Grass/VcfConverter.html
 docs/reports_html/common.js
+docs/reports_html/cover.14
 docs/reports_html/cover.css
 docs/reports_html/coverage.html
 docs/reports_html/css.js

diff --git a/MYMETA.json b/MYMETA.json
@@ -4,7 +4,7 @@
       "unknown"
    ],
    "dynamic_config" : 0,
-   "generated_by" : "ExtUtils::MakeMaker version 6.68, CPAN::Meta::Converter version 2.131560",
+   "generated_by" : "ExtUtils::MakeMaker version 6.68, CPAN::Meta::Converter version 2.142690",
    "license" : [
       "agpl_3"
    ],
@@ -45,5 +45,5 @@
       }
    },
    "release_status" : "stable",
-   "version" : "v1.0.1"
+   "version" : "v1.1.0"
 }
diff --git a/MYMETA.yml b/MYMETA.yml
@@ -3,28 +3,28 @@ abstract: unknown
 author:
   - unknown
 build_requires:
-  ExtUtils::MakeMaker: 0
+  ExtUtils::MakeMaker: '0'
 configure_requires:
-  ExtUtils::MakeMaker: 0
+  ExtUtils::MakeMaker: '0'
 dynamic_config: 0
-generated_by: 'ExtUtils::MakeMaker version 6.68, CPAN::Meta::Converter version 2.131560'
+generated_by: 'ExtUtils::MakeMaker version 6.68, CPAN::Meta::Converter version 2.142690'
 license: open_source
 meta-spec:
   url: http://module-build.sourceforge.net/META-spec-v1.4.html
-  version: 1.4
+  version: '1.4'
 name: Grass
 no_index:
   directory:
     - t
     - inc
 requires:
-  Attribute::Abstract: 1.02
-  Bio::DB::Sam: 1.39
-  Bio::Root::Version: 1.006923
-  Const::Fast: 0.014
-  Devel::Cover: 1.09
-  List::Util: 1.38
-  Pod::Coverage: 0.23
-  Sub::Exporter::Progressive: 0.001011
-  Try::Tiny: 0.19
-version: v1.0.1
+  Attribute::Abstract: '1.02'
+  Bio::DB::Sam: '1.39'
+  Bio::Root::Version: '1.006923'
+  Const::Fast: '0.014'
+  Devel::Cover: '1.09'
+  List::Util: '1.38'
+  Pod::Coverage: '0.23'
+  Sub::Exporter::Progressive: '0.001011'
+  Try::Tiny: '0.19'
+version: v1.1.0
diff --git a/docs.tar.gz b/docs.tar.gz
diff --git a/lib/Sanger/CGP/Grass.pm b/lib/Sanger/CGP/Grass.pm
@@ -2,21 +2,21 @@ package Sanger::CGP::Grass;
 
 ##########LICENCE##########
 # Copyright (c) 2014 Genome Research Ltd.
-# 
+#
 # Author: Lucy Stebbings <cgpit@sanger.ac.uk>
-# 
+#
 # This file is part of grass.
-# 
+#
 # grass is free software: you can redistribute it and/or modify it under
 # the terms of the GNU Affero General Public License as published by the Free
 # Software Foundation; either version 3 of the License, or (at your option) any
 # later version.
-# 
+#
 # This program is distributed in the hope that it will be useful, but WITHOUT
 # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
 # FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
 # details.
-# 
+#
 # You should have received a copy of the GNU Affero General Public License
 # along with this program. If not, see <http://www.gnu.org/licenses/>.
 ##########LICENCE##########
@@ -25,6 +25,6 @@ package Sanger::CGP::Grass;
 use strict;
 use Const::Fast qw(const);
 
-our $VERSION = '1.0.1';
+our $VERSION = '1.1.0';
 
 1;
diff --git a/testData/test_VcfConverterII_ann.vcf b/testData/test_VcfConverterII_ann.vcf
@@ -1,6 +1,6 @@
 ##fileformat=VCFv4.1
 ##fileDate=20140512
-##source_20140512.1=VcfConverter.t_v1.0.1
+##source_20140512.1=VcfConverter.t_v1.1.0
 ##reference=/nfs/users/nfs_l/las/CGP_github/grass/t/../testData/genome.fa
 ##contig=<ID=1,assembly=GRC37,length=249250621,species=HUMAN>
 ##contig=<ID=2,assembly=GRC37,length=243199373,species=HUMAN>
@@ -59,7 +59,7 @@
 ##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample (PD1234a) that contribute to this rearrangement">
 ##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample (PD1234b) that contribute to this rearrangement">
 ##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
-##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.0.1>>
+##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.0>>
 ##SAMPLE=<ID=NORMAL,Description="Normal",Accession=45,Platform=HiSeq,Protocol=genomic,SampleName=PD1234b,Source=ID_SAMPLE_COSMIC,Study=12346>
 ##SAMPLE=<ID=TUMOUR,Description="Mutant",Accession=123,Platform=HiSeq,Protocol=genomic,SampleName=PD1234a,Source=ID_SAMPLE_COSMIC,Study=12345>
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOUR

diff --git a/testData/test_VcfConverter_ann.vcf b/testData/test_VcfConverter_ann.vcf
@@ -1,6 +1,6 @@
 ##fileformat=VCFv4.1
 ##fileDate=20140512
-##source_20140512.1=VcfConverter.t_v1.0.1
+##source_20140512.1=VcfConverter.t_v1.1.0
 ##reference=/nfs/users/nfs_l/las/CGP_github/grass/t/../testData/genome.fa
 ##contig=<ID=1,assembly=GRC37,length=249250621,species=HUMAN>
 ##contig=<ID=2,assembly=GRC37,length=243199373,species=HUMAN>
@@ -59,7 +59,7 @@
 ##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample (PD1234a) that contribute to this rearrangement">
 ##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample (PD1234b) that contribute to this rearrangement">
 ##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
-##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.0.1>>
+##vcfProcessLog_20140512.1=<InputVCFSource=<VcfConverter.t>,InputVCFVer=<1.1.0>>
 ##SAMPLE=<ID=NORMAL,Description="Normal",Accession=45,Platform=HiSeq,Protocol=genomic,SampleName=PD1234b,Source=ID_SAMPLE_COSMIC,Study=12346>
 ##SAMPLE=<ID=TUMOUR,Description="Mutant",Accession=123,Platform=HiSeq,Protocol=genomic,SampleName=PD1234a,Source=ID_SAMPLE_COSMIC,Study=12345>
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOUR

diff --git a/testData/testout_Brass_ann.vcf b/testData/testout_Brass_ann.vcf
@@ -1,6 +1,6 @@
 ##fileformat=VCFv4.1
 ##fileDate=20140512
-##source_20140512.1=grass.pl_v1.0.1
+##source_20140512.1=grass.pl_v1.1.0
 ##reference=/nfs/cancer_ref01/human/37/genome.fa
 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant. (All sequence is on the plus strand and in the forward direction).">
 ##INFO=<ID=MATEID,Number=1,Type=String,Description="ID of mate breakend">
@@ -34,7 +34,7 @@
 ##INFO=<ID=TRDS,Number=.,Type=String,Description="Reads from the tumour sample () that contribute to this rearrangement">
 ##INFO=<ID=NRDS,Number=.,Type=String,Description="Reads from the normal sample () that contribute to this rearrangement">
 ##FORMAT=<ID=RC,Number=1,Type=Integer,Description="Count of countributing reads">
-##vcfProcessLog_20140512.1=<InputVCFSource=<grass.pl>,InputVCFVer=<1.0.1>>
+##vcfProcessLog_20140512.1=<InputVCFSource=<grass.pl>,InputVCFVer=<1.1.0>>
 ##SAMPLE=<ID=NORMAL,Description="Normal",SampleName=>
 ##SAMPLE=<ID=TUMOUR,Description="Mutant",SampleName=>
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOUR