Code

Update main to version 0.3.4#6

Code

Merged

r-trimbour merged 31 commits intomaincantinilab/Circe:mainfrom devcantinilab/Circe:devCopy head branch name to clipboardOct 22, 2024

+555-10,664

Commits

Commits on Oct 6, 2024

• update sliding_graphical lasso to parallelized version

  r-trimbour

  committed
  b28f708

• import joblib

  r-trimbour

  committed
  c382077

• Merge pull request #1 from cantinilab/main

  Show description for 32e291e
  r-trimbour

  authored
  32e291e

• pushed to version 0.3.0

  r-trimbour

  committed
  31147f3

• updated compute_atac_network to multithreading too

  r-trimbour

  committed
  41e9895

Commits on Oct 9, 2024

• correct loop that was only returning lost chromosome

  r-trimbour

  committed
  a8835e9

• correct loop that was only returning lost chromosome

  r-trimbour

  committed
  ce8d515

Commits on Oct 14, 2024

• rename var from AnnData to adata

  r-trimbour

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  36e7c6e

• Allow precomputed dimensionality reduction coordinates for metacells

  r-trimbour

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  d130dc4

• Update codecov.yaml

  r-trimbour

  authored
  5bfbff0

• update build-backend to setuptools default

  r-trimbour

  committed
  6fa679d

• Merge branch 'dev' of github.com:cantinilab/Circe into dev

  r-trimbour

  committed
  874ac1d

• Update pyproject.toml, adding wheel as build dependency

  r-trimbour

  authored
  5340ff8

• Update codecov.yaml

  r-trimbour

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  6d6b0f0

• explicit lapack installation

  r-trimbour

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  9fa0a6d

Commits on Oct 15, 2024

• allow dim_reduction precomputed key

  r-trimbour

  committed
  45d325b

• Merge branch 'dev' of github.com:cantinilab/Circe into dev

  r-trimbour

  committed
  2d9d6fa

• allow dim_reduction precomputed key and update to 3.3

  r-trimbour

  committed
  260d74a

Commits on Oct 16, 2024

• update local to global import, build with python buid instead of poetry

  r-trimbour

  committed
  83a0a5e

• import pyquic as circe.pyquic

  r-trimbour

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  13f2292

• Create wheels.yml

  r-trimbour

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  c2f1878

• Update wheels.yml

  r-trimbour

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  6c248c9

• Update wheels.yml

  r-trimbour

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  2c9341a

• Update wheels.yml

  r-trimbour

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  fb218f3

• use max_elements and discard windows with more elements in sliding_graphical_windows too

  r-trimbour

  authored
  28a5e16

• Delete tests/ccans_modules directory

  r-trimbour

  authored
  b4f3225

• Update codecov.yaml

  r-trimbour

  authored
  36744b7

Commits on Oct 17, 2024

• TO CLEAN: add plot and ccan related firs tests'

  r-trimbour

  committed
  6d6e3b2

• explicit liblapack and blas dependecy

  r-trimbour

  committed
  a6a144d

• Update test_ccans_modules.py

  r-trimbour

  authored
  23388fa

Commits on Oct 22, 2024

• Merge branch 'main' into dev

  r-trimbour

  authored
  d320976