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@cas-bioinf

Bioinformatics @ Institute of Microbiology of the Czech Academy of Sciences

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  1. covid19retrospective covid19retrospective Public

    R 9

  2. cy-dataseries cy-dataseries Public

    A Cytoscape plugin for handling series of data (time series, repeated measurements, ...)

    Java 3 1

  3. genexpi-stan genexpi-stan Public

    A Bayesian model of gene regulation

    HTML 3 1

  4. genexpi genexpi Public

    Gene Network Inference from Expression Time Series

    HTML 2 1

  5. suboptimalstructures suboptimalstructures Public

    WIP webserver for an RNA analysis tool - finding homologs through suboptimal structures.

    Elm 1

  6. rboAnalyzer rboAnalyzer Public

    Tool for analysing BLAST output for ncRNA sequences

    Python 1 2

Repositories

Showing 10 of 18 repositories
  • RibosomeProfiling Public

    Methods and scripts that we use for analyzing RiboSeq data

    cas-bioinf/RibosomeProfiling’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Nov 1, 2024
  • Scoe_SigE_ChIP-seq Public

    Code for Streptomyces coelicolor SigE ChIP-seq motif analysis

    cas-bioinf/Scoe_SigE_ChIP-seq’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Dec 11, 2023
  • prpf8 Public
    cas-bioinf/prpf8’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Mar 31, 2023
  • SBCDeseq2 Public

    Simulation-based calibration of DESeq2 results

    cas-bioinf/SBCDeseq2’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Oct 20, 2022
  • rboAnalyzer Public

    Tool for analysing BLAST output for ncRNA sequences

    cas-bioinf/rboAnalyzer’s past year of commit activity
    Python 1 GPL-2.0 2 0 0 Updated May 19, 2022
  • web-core-facility Public

    Web site of the bioinformatics core facility at IMIC CAS

    cas-bioinf/web-core-facility’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated May 6, 2022
  • covid19retrospective Public
    cas-bioinf/covid19retrospective’s past year of commit activity
    R 9 0 0 0 Updated Sep 7, 2021
  • metagenboot Public
    cas-bioinf/metagenboot’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Feb 17, 2021
  • chrnb2_striatum Public
    cas-bioinf/chrnb2_striatum’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Jan 7, 2021
  • statistical-simulations Public

    A collection of small notebooks showing some statistical properties via simulation

    cas-bioinf/statistical-simulations’s past year of commit activity
    R 0 BSD-3-Clause 1 0 0 Updated Dec 9, 2020
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