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8 changes: 5 additions & 3 deletions README.md
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Expand Up @@ -65,15 +65,17 @@ For the most part, these runs are based on [_default_ parameter settings](https:
+ Document ranking, complete doc[*](docs/experiments-msmarco-doc-doc2query-details.md): [baselines](docs/regressions-dl20-doc.md), [doc2query-T5](docs/regressions-dl20-doc-docTTTTTquery.md)
+ Document ranking, segmented doc[*](docs/experiments-msmarco-doc-doc2query-details.md): [baselines](docs/regressions-dl20-doc-segmented.md), [doc2query-T5](docs/regressions-dl20-doc-segmented-docTTTTTquery.md)
+ Regressions for MS MARCO (V2) Passage Ranking:
+ Bag-of-words models, default corpus: [baselines](docs/regressions-msmarco-v2-passage.md)
+ Bag-of-words models, augmented corpus: [baselines](docs/regressions-msmarco-v2-passage-augmented.md)
+ Bag-of-words models, original corpus: [baselines](docs/regressions-msmarco-v2-passage.md), [doc2query-T5](docs/regressions-msmarco-v2-passage-d2q-t5.md)
+ Bag-of-words models, augmented corpus: [baselines](docs/regressions-msmarco-v2-passage-augmented.md), [doc2query-T5](docs/regressions-msmarco-v2-passage-augmented-d2q-t5.md)
+ Sparse learned models: [uniCOIL noexp zero-shot](docs/regressions-msmarco-v2-passage-unicoil-noexp-0shot.md)
+ Regressions for MS MARCO (V2) Document Ranking:
+ Bag-of-words, complete doc: [baselines](docs/regressions-msmarco-v2-doc.md), [doc2query-T5](docs/regressions-msmarco-v2-doc-d2q-t5.md)
+ Bag-of-words, segmented doc: [baselines](docs/regressions-msmarco-v2-doc-segmented.md), [doc2query-T5](docs/regressions-msmarco-v2-doc-segmented-d2q-t5.md)
+ Sparse learned models: [uniCOIL noexp zero-shot](docs/regressions-msmarco-v2-doc-segmented-unicoil-noexp-0shot.md)
+ Regressions for TREC 2021 Deep Learning Track:
+ Passage ranking: [baselines](docs/regressions-dl21-passage.md), [on augmented corpus](docs/regressions-dl21-passage-augmented.md), [uniCOIL noexp zero-shot](docs/regressions-dl21-passage-unicoil-noexp-0shot.md)
+ Passage ranking, original corpus: [baselines](docs/regressions-dl21-passage.md), [doc2query-T5](docs/regressions-dl21-passage-d2q-t5.md)
+ Passage ranking, augmented corpus: [baselines](docs/regressions-dl21-passage-augmented.md), [doc2query-T5](docs/regressions-dl21-passage-augmented-d2q-t5.md)
+ Passage ranking, sparse learned models: [uniCOIL noexp zero-shot](docs/regressions-dl21-passage-unicoil-noexp-0shot.md)
+ Document ranking, complete doc: [baselines](docs/regressions-dl21-doc.md), [doc2query-T5](docs/regressions-dl21-doc-d2q-t5.md)
+ Document ranking, segmented doc: [baselines](docs/regressions-dl21-doc-segmented.md), [doc2query-T5](docs/regressions-dl21-doc-segmented-d2q-t5.md)
+ Document ranking, sparse learned models: [uniCOIL noexp zero-shot](docs/regressions-dl21-doc-segmented-unicoil-noexp-0shot.md)
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98 changes: 98 additions & 0 deletions docs/regressions-dl21-passage-augmented-d2q-t5.md
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# Anserini: Regressions for [DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning.html)

This page describes document expansion experiments (with doc2query-T5), integrated into Anserini's regression testing framework, for the TREC 2021 Deep Learning Track (Passage Ranking Task) on the MS MARCO V2 _augmented_ passage collection using relevance judgments from NIST.

At the time this regression was created (November 2021), the qrels are only available to TREC participants.
You must download the qrels from NIST's "active participants" password-protected site and place at `src/main/resources/topics-and-qrels/qrels.dl21-passage.txt`.
The qrels will be added to Anserini when they are publicly released in Spring 2022.

Note that the NIST relevance judgments provide far more relevant passages per topic, unlike the "sparse" judgments provided by Microsoft (these are sometimes called "dense" judgments to emphasize this contrast).
For additional instructions on working with MS MARCO passage collection, refer to [this page](experiments-msmarco-v2.md).

The exact configurations for these regressions are stored in [this YAML file](../src/main/resources/regression/dl21-passage-augmented-d2q-t5.yaml).
Note that this page is automatically generated from [this template](../src/main/resources/docgen/templates/dl21-passage-augmented-d2q-t5.template) as part of Anserini's regression pipeline, so do not modify this page directly; modify the template instead.

## Indexing

Typical indexing command:

```
target/appassembler/bin/IndexCollection \
-collection MsMarcoV2PassageCollection \
-input /path/to/msmarco-v2-passage-augmented-d2q-t5 \
-index indexes/lucene-index.msmarco-v2-passage-augmented-d2q-t5/ \
-generator DefaultLuceneDocumentGenerator \
-threads 18 -storePositions -storeDocvectors -storeRaw \
>& logs/log.msmarco-v2-passage-augmented-d2q-t5 &
```

The value of `-input` should be a directory containing the compressed `jsonl` files that comprise the corpus.
See [this page](experiments-msmarco-v2.md) for additional details.

For additional details, see explanation of [common indexing options](common-indexing-options.md).

## Retrieval

Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/main/resources/topics-and-qrels/).
The regression experiments here evaluate on the 53 topics for which NIST has provided judgments as part of the TREC 2021 Deep Learning Track.
<!-- The original data can be found [here](https://trec.nist.gov/data/deep2021.html). -->

After indexing has completed, you should be able to perform retrieval as follows:

```
target/appassembler/bin/SearchCollection \
-index indexes/lucene-index.msmarco-v2-passage-augmented-d2q-t5/ \
-topics src/main/resources/topics-and-qrels/topics.dl21.txt -topicreader TsvInt \
-output runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt \
-bm25 &
target/appassembler/bin/SearchCollection \
-index indexes/lucene-index.msmarco-v2-passage-augmented-d2q-t5/ \
-topics src/main/resources/topics-and-qrels/topics.dl21.txt -topicreader TsvInt \
-output runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt \
-bm25 -rm3 &
```

Evaluation can be performed using `trec_eval`:

```
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m map -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m recip_rank -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m ndcg_cut.10 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.100 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.1000 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m map -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m recip_rank -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m ndcg_cut.10 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.100 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.1000 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-augmented-d2q-t5.bm25-default+rm3.topics.dl21.txt
```

## Effectiveness

With the above commands, you should be able to reproduce the following results:

MAP@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.1649 | 0.1932 |


MRR@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.6391 | 0.5882 |


nDCG@10 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.4702 | 0.4834 |


R@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.3883 | 0.4295 |


R@1000 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.6962 | 0.7668 |
98 changes: 98 additions & 0 deletions docs/regressions-dl21-passage-d2q-t5.md
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# Anserini: Regressions for [DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning.html)

This page describes document expansion experiments (with doc2query-T5), integrated into Anserini's regression testing framework, for the TREC 2021 Deep Learning Track (Passage Ranking Task) on the MS MARCO V2 passage collection using relevance judgments from NIST.

At the time this regression was created (November 2021), the qrels are only available to TREC participants.
You must download the qrels from NIST's "active participants" password-protected site and place at `src/main/resources/topics-and-qrels/qrels.dl21-passage.txt`.
The qrels will be added to Anserini when they are publicly released in Spring 2022.

Note that the NIST relevance judgments provide far more relevant passages per topic, unlike the "sparse" judgments provided by Microsoft (these are sometimes called "dense" judgments to emphasize this contrast).
For additional instructions on working with MS MARCO passage collection, refer to [this page](experiments-msmarco-v2.md).

The exact configurations for these regressions are stored in [this YAML file](../src/main/resources/regression/dl21-passage-d2q-t5.yaml).
Note that this page is automatically generated from [this template](../src/main/resources/docgen/templates/dl21-passage-d2q-t5.template) as part of Anserini's regression pipeline, so do not modify this page directly; modify the template instead.

## Indexing

Typical indexing command:

```
target/appassembler/bin/IndexCollection \
-collection MsMarcoV2PassageCollection \
-input /path/to/msmarco-v2-passage-d2q-t5 \
-index indexes/lucene-index.msmarco-v2-passage-d2q-t5/ \
-generator DefaultLuceneDocumentGenerator \
-threads 18 -storePositions -storeDocvectors -storeRaw \
>& logs/log.msmarco-v2-passage-d2q-t5 &
```

The value of `-input` should be a directory containing the compressed `jsonl` files that comprise the corpus.
See [this page](experiments-msmarco-v2.md) for additional details.

For additional details, see explanation of [common indexing options](common-indexing-options.md).

## Retrieval

Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/main/resources/topics-and-qrels/).
The regression experiments here evaluate on the 53 topics for which NIST has provided judgments as part of the TREC 2021 Deep Learning Track.
<!-- The original data can be found [here](https://trec.nist.gov/data/deep2021.html). -->

After indexing has completed, you should be able to perform retrieval as follows:

```
target/appassembler/bin/SearchCollection \
-index indexes/lucene-index.msmarco-v2-passage-d2q-t5/ \
-topics src/main/resources/topics-and-qrels/topics.dl21.txt -topicreader TsvInt \
-output runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt \
-bm25 &
target/appassembler/bin/SearchCollection \
-index indexes/lucene-index.msmarco-v2-passage-d2q-t5/ \
-topics src/main/resources/topics-and-qrels/topics.dl21.txt -topicreader TsvInt \
-output runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt \
-bm25 -rm3 &
```

Evaluation can be performed using `trec_eval`:

```
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m map -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m recip_rank -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m ndcg_cut.10 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.100 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.1000 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m map -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -M 100 -m recip_rank -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m ndcg_cut.10 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.100 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt
tools/eval/trec_eval.9.0.4/trec_eval -c -m recall.1000 -l 2 src/main/resources/topics-and-qrels/qrels.dl21-passage.txt runs/run.msmarco-v2-passage-d2q-t5.bm25-default+rm3.topics.dl21.txt
```

## Effectiveness

With the above commands, you should be able to reproduce the following results:

MAP@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.1874 | 0.2271 |


MRR@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.6848 | 0.6651 |


nDCG@10 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.4816 | 0.5099 |


R@100 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.4076 | 0.4444 |


R@1000 | BM25 (default)| +RM3 |
:---------------------------------------|-----------|-----------|
[DL21 (Passage)](https://microsoft.github.io/msmarco/TREC-Deep-Learning)| 0.7078 | 0.7512 |
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