Skip to content

catmaid/CATMAID

Folders and files

NameName
Last commit message
Last commit date
Oct 7, 2021
Jun 30, 2022
Feb 27, 2020
Mar 6, 2019
Mar 18, 2022
Mar 20, 2022
May 3, 2018
Jun 9, 2020
Feb 5, 2021
Dec 20, 2021
Jul 16, 2020
Jun 4, 2020
Mar 10, 2021
Dec 28, 2021
Jun 30, 2022
May 19, 2021
Nov 30, 2015
Dec 18, 2021
Jun 24, 2015
Dec 19, 2021
Dec 21, 2021
May 24, 2021
Feb 14, 2018
Dec 21, 2021
Feb 26, 2021
May 24, 2021
Dec 22, 2020

Repository files navigation

CATMAID

The Collaborative Annotation Toolkit for Massive Amounts of Image Data

For more information, see http://www.catmaid.org/

Status

This reflects the status of our tests:

CI Coverage Status

Releases

Versions that we consider stable are tagged as release and are merged into the repository's master branches. These versions are additionally available as bundled download.

Development

We follow a development model that borrows ideas from GitFlow, but is less strict. Regular development happens in the dev branch or topic branches that are later merged into dev. Release branches are created off of dev and contain additional release preparation changes. When ready, a release commit is tagged and then merged into master and dev. In case a release requires additional fixes maintenance branches are created based on the respective release commits. Maintenance branches are considered stable and are merged into both master and dev.

Screenshots

CATMAID's neuron tracing and analysis environment in the FAFB Drosophila dataset:

Image of CATMAID's neuron tracing and analysis environment in the FAFB Drosophila dataset

CATMAID's neuron tracing environment and NBLAST similarity analysis in the L1 Drosophila dataset:

Image of CATMAID's neuron tracing environment and NBLAST similarity analysis in the L1 Drosophila dataset

Drosophila multi-channel light data with different ontology annotation and analysis tools:

Image of Drosophila light data and different ontology annotation and analysis tools