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Taxonomy lookup error in BlastMeta.sh #19

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cbird808 opened this issue Aug 11, 2019 · 2 comments
Open

Taxonomy lookup error in BlastMeta.sh #19

cbird808 opened this issue Aug 11, 2019 · 2 comments

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@cbird808
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cbird808 commented Aug 11, 2019 •
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The following error repeats many times:
Warning: [blastn] Taxonomy name lookup from taxid requires installation of taxdb database with ftp://ftp.ncbi.nlm.nih.gov/blast/db/taxdb.tar.gz

this is happening on my laptop when running the drymon 2018 fall data. I have installed the taxonomy database per the readme.MD file
@ekrell
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ekrell commented Aug 12, 2019

It is expected. The taxonomy info is added later. I won't close the issue yet since it would be nice if the pipeline could somehow suppress this warning message.

@cbird808
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how about appending this to the blastn line: 2> /dev/null ?

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@ekrell @cbird808