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24 Open 26 Closed
24 Open 26 Closed
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Issues list

The OError occurred while installing obitools
#50 opened Aug 26, 2021 by hlan7171
Add barcode checker script.
#49 opened Mar 13, 2021 by ekrell
Add common names back in
#48 opened Mar 11, 2021 by ekrell
2 tasks
Install Obitools in README.md Doesn't Work
#47 opened Mar 11, 2021 by cbird808
2
Sanitize strings in charon file creation
#43 opened Aug 31, 2019 by ekrell
Should split into chunks for parallel ecotag
#42 opened Aug 31, 2019 by ekrell
charybdis/bin/OTU_CVT_addSampleDescs.R is fragile!
#41 opened Aug 31, 2019 by ekrell
1
Add code to evaluate barcodes and change i to N
#40 opened Aug 29, 2019 by cbird808
make it easier to run particular portions of charybdis
#38 opened Aug 17, 2019 by cbird808
Crop_size_fix.sh writes to file too often for HPC and is super slow
#31 opened Aug 15, 2019 by cbird808
1
ObiToolsPipeline.sh writes too many files for our HPC
#29 opened Aug 15, 2019 by cbird808
progress reporting
#26 opened Aug 13, 2019 by cbird808
3
crittersVStubes_OTU.R is extremely slow and does not run in parallel
#23 opened Aug 12, 2019 by cbird808
3
dat files created by BlastMeta.sh neccessary?
#20 opened Aug 11, 2019 by cbird808
Taxonomy lookup error in BlastMeta.sh
#19 opened Aug 11, 2019 by cbird808
2
Python calculation error in ClusterOTU.sh
#18 opened Aug 9, 2019 by cbird808
1
Pipeline dies if not all barcodes (samples) are represented.
#16 opened Jun 8, 2019 by ekrell
2
Make sure 'temp' ecotag fasta is converted to final
#15 opened Jun 8, 2019 by ekrell
module load errors
#14 opened May 29, 2019 by cbird808
1
readme example data dir
#12 opened May 29, 2019 by cbird808
Readme quickstart dirs
#11 opened May 29, 2019 by cbird808
Update manual given recent changes.
#10 opened May 28, 2019 by ekrell
1
Create our own database on genomics server with the large data files, with download script
#9 opened May 25, 2019 by ekrell
4
amend code to not require chimera_db file, then delete testrun/chimera*
#4 opened May 17, 2019 by cbird808
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