Crop_size_fix.sh writes to file too often for HPC and is super slow

[cbird808]

need to streamline

[cbird808]

here's one suggestion:

# Make files that contain all sequence IDs in each OTU

while read p; do
    #orig code
    FHandle=`echo $p | awk '{print $1}'`
    echo $FHandle > $FHandle.cluster.list
    echo $p | awk '{print $2}' | sed -e 's/,/\n/g' >> $FHandle.cluster.list
	
    #CEB alternative that only writes once instead of twice
    FHandle=`echo $p | awk '{print $1}'`
    echo $p | awk '{ for(i=1;i<=NF;i++){ print $i}}' | tr "," "\n" > $FHandle.cluster.list
done <$CROP_LIST