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@ccb-hms

Core for Computational Biomedicine

Harvard Medical School

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  1. BioPlex BioPlex Public

    R-side access to PPI data from Gygi lab

    R 6 2

  2. ontology-mapper ontology-mapper Public

    a tool for mapping free-text descriptions of entities to ontology terms

    Python 14 3

  3. HuBMAPy HuBMAPy Public

    A package to query the HuBMAP Human Reference Atlas Ontology

    Python 1 3

  4. MerfishData MerfishData Public

    Collection of public MERFISH datasets

    R 1 2

  5. nhanes-database nhanes-database Public

    R 5 4

  6. computervision computervision Public

    Everything to get started with computer vision

    Jupyter Notebook 4 1

Repositories

Showing 10 of 81 repositories
  • ProteinGymR Public

    Programmatic access to ProteinGym datasets in R/Bioconductor

    ccb-hms/ProteinGymR’s past year of commit activity
    R 0 0 6 0 Updated Oct 18, 2024
  • AlphaMissenseR Public Forked from mtmorgan/AlphaMissenseR

    Accessing AlphaMissense Data Resources in R

    ccb-hms/AlphaMissenseR’s past year of commit activity
    R 0 1 2 0 Updated Oct 16, 2024
  • osca-workbench Public

    Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.

    ccb-hms/osca-workbench’s past year of commit activity
    R 2 1 11 0 Updated Oct 15, 2024
  • workbench-python-workshop Public

    8-hour workshop introducing Python using The Carpentries new workbench template.

    ccb-hms/workbench-python-workshop’s past year of commit activity
    1 0 0 0 Updated Oct 15, 2024
  • cadence Public

    A project for creating meeting schedules.

    ccb-hms/cadence’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Oct 5, 2024
  • CyCIFData Public

    Collection of public CyCIF datasets

    ccb-hms/CyCIFData’s past year of commit activity
    R 1 MIT 1 0 0 Updated Sep 30, 2024
  • scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data

    ccb-hms/scDiagnostics’s past year of commit activity
    R 3 2 6 0 Updated Sep 29, 2024
  • scCalibratoR Public

    scCalibratoR is an R/Bioconductor package designed to address challenges in single-cell RNA sequencing (scRNA-seq) analysis, including batch effect correction and annotation refinement.

    ccb-hms/scCalibratoR’s past year of commit activity
    0 0 0 0 Updated Sep 20, 2024
  • computervision Public

    Everything to get started with computer vision

    ccb-hms/computervision’s past year of commit activity
    Jupyter Notebook 4 CC-BY-4.0 1 1 0 Updated Sep 15, 2024
  • periomodel Public

    Estimating Periodontal Stability Using Computer Vision

    ccb-hms/periomodel’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Sep 10, 2024
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