Skip to content

Issues: ccmbioinfo/crg2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

38 Open 44 Closed
38 Open 44 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Look at combining hg19 and hg38 branches into one branch
#222 opened Jun 25, 2024 by Madelinehazel
Consolidate and move annotation files
#221 opened Jun 25, 2024 by Madelinehazel
Add ReMM score to crg2-hg38
#220 opened Jun 25, 2024 by Madelinehazel
@pamelaxu213
1
AlphaMissense for hg38
#219 opened Jun 25, 2024 by anjalijain22
@anjalijain22
Update CADD to v1.7
#218 opened Jun 25, 2024 by pamelaxu213
@pamelaxu213
Upgrade mity to v1.0.0 for GRCh37 crg2 pipeline
#210 opened Mar 26, 2024 by anjalijain22
@anjalijain22 @il-abbasi
Incorporate FATHMM-XF into annotation pipeline
#208 opened Mar 6, 2024 by Madelinehazel
@r-varan
Incorporate ncER into annotation pipeline
#206 opened Mar 5, 2024 by Madelinehazel
@il-abbasi
Incorporate LINSIGHT into annotation pipeline
#203 opened Feb 26, 2024 by Madelinehazel
@suzanahmad
1
Report generation: trio report using slivar
#202 opened Feb 12, 2024 by pamelaxu213
UTRAnnotator 5'UTR variants
#201 opened Feb 5, 2024 by pamelaxu213
Non-coding variant effect prediction: DeepFormer
#200 opened Feb 5, 2024 by Madelinehazel
Non-coding variant effect prediction: SEI
#198 opened Feb 5, 2024 by Madelinehazel
Non-coding variant effect prediction: DeepCT
#197 opened Feb 5, 2024 by Madelinehazel
Mosaic SV/CNVs?
#196 opened Jan 22, 2024 by Madelinehazel
GATK-DRAGEN variant calling
#195 opened Jan 22, 2024 by Madelinehazel
PhenoSV for structural variant prioritization
#194 opened Jan 22, 2024 by Madelinehazel
Protein domains
#193 opened Jan 22, 2024 by Madelinehazel
RegVar 3'UTR
#192 opened Jan 22, 2024 by Madelinehazel
@pamelaxu213
SV reports: add in read depth and alt allele depth (and maybe genotype)
#191 opened Jan 22, 2024 by Madelinehazel
@r-varan
Benchmark hg38: WGS
#190 opened Jan 22, 2024 by Madelinehazel
@il-abbasi
Benchmark hg38: WES
#189 opened Jan 22, 2024 by Madelinehazel
@il-abbasi
STRs for hg38
#187 opened Jan 22, 2024 by Madelinehazel
gnomAD update
#183 opened Jan 22, 2024 by Madelinehazel
@anjalijain22 @r-varan
MT for hg38
#182 opened Jan 22, 2024 by Madelinehazel
@anjalijain22
ProTip! Find all open issues with in progress development work with linked:pr.