Add new value: hospital/ICU admissions #111
Comments
jeanpaulrsoucy
added
the
data
- Add `hospitalizations_admissions` and `icu_admissions` (ccodwg/CovidTimelineCanada#111) - Add `vaccine_administration_last_6_months` and `vaccine_coverage_last_6_months` (ccodwg/CovidTimelineCanada#91) - Correct omission of `hospitalizations_cum` in a part of `process_dataset.R`
- So far, only MB data are included in the experimental hosp_admissions and icu_admissions dataset. - ccodwg/CovidTimelineCanada#111 - ccodwg/CovidTimelineCanada#82
- Update hospitalization/ICU data (ccodwg/CovidTimelineCanada#82) - Remove covid19tracker.ca hosp/ICU data for NU, NT, YT (unreliable) - Remove covid19tracker.ca hosp/ICU data for SK (captured in weekly report data) - Update SK hosp/ICU data to use weekly report data (ccodwg/CovidTimelineCanada#64) - Update YT with hosp admission time series (ccodwg/CovidTimelineCanada#111)
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Note, for the hospital admission time series for YT, there are two datasets: the CSV ( |
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A time series of admissions for NS can be extracted from An active_cumul strategy can be adopted for NL from |
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A potential issue with admission data is that the full cumulative number may not be available, or only available beginning a certain date. Data notes will have to be included, at minimum. Will also have to edit datasets so that they have the correct daily values in the first row rather than the full cumulative value. |
- Update processing for AB datasets (ccodwg/CovidTimelineCanada#116) - Add support for ON admissions (ccodwg/CovidTimelineCanada#111) - Add support for ON PT-level deaths (ccodwg/CovidTimelineCanada#120)
- hosp_admissions and icu_admissions (ccodwg/CovidTimelineCanada#111) - PT-level deaths time series for later use (ccodwg/CovidTimelineCanada#120)
- Add AB, ON hosp_admissions and icu_admissions (AB only) (#111) - Add AB, ON PT-level deaths time series for later use (#120) - Add old daily HR-level hosp_admissions dataset for ON (`raw_data/static/on/hosp_admissions_hr_ts.csv`) for posterity, but do not use over the current weekly dataset because the most recent weeks of data in the old time series are incomplete
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I added an old daily HR-level hosp_admissions dataset for ON ( |
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PEI starts tallying hosp/ICU admissions on their webpage on 2021-12-31 ( |
- Update BC cases, deaths, hosp_admissions, icu_admissions to use cumulative time series from COVID-19 Situation Report (ccodwg/CovidTimelineCanada#118, ccodwg/CovidTimelineCanada#111) - Update BC hospitalization, icu to use data from COVID-19 Situation Report (ccodwg/CovidTimelineCanada#82)
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It should be possible to censor the |
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PE hosp/ICU admissions are reported on the old COVID-19 data page ( |
…111) - MB raw data scraped from MB COVID-19 bulletins (news releases) - NS hosp admissions from mostly recent value for each date from the archived time series of `ae74c46f-dec7-43d6-a42b-86c7242f0868`
- Add final testing data for NB (ccodwg/CovidTimelineCanada#94) - Update hosp admissions data for NS (ccodwg/CovidTimelineCanada#111)
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Hospital admissions are reported on the NT dashboard from 2021-08-25 to the end of the dashboard, 2022-06-13. ICU admissions are reported on the NT dashboard from 2021-09-08 to the end of the dashboard, 2022-06-13. Prior to 2021-09-08, ICU admissions are simply reported as being "<5". |
- Confirm NU has no admissions data
- ccodwg/CovidTimelineCanada#111 - Since cumulative values are given but time series does not start at the beginning, the daily value is censored on the first date of data - Update `write_dataset` to write blank NA values
- Since cumulative values are given but time series does not start at the beginning, the daily value is censored on the first date of data
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Decided against including SK hosp admission data from the period of the first weekly report (#64) (i.e., during the period when hospital/ICU occupancy were reported) for several reasons:
Instead, I will begin using data starting with the monthly report. |
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Should suppress first date of |
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See discussion of CCCS data for the Territories (#82 (comment)). |
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The graphic in this news release suggests that hospital admissions probably include ICU admissions: The metadata could probably be updated with this new information (#37). |
- Add new NS report (ccodwg/CovidTimelineCanada#94) - Add new PE report (ccodwg/CovidTimelineCanada#94) - Add NS case, death, hosp admission data from new report (ccodwg/CovidTimelineCanada#111)
- PE hosp/ICU admissions data extraction by Kyla Belisario - Previous PE hosp/ICU occupancy data extraction by Benjamin Wong Co-authored-by: Kyla Belisario (she/her) <71769015+kbelisar@users.noreply.github.com> Co-authored-by: Benjamin Wong <ben.kcwong@gmail.com>
- Add PE hosp/ICU admissions data (#111) - Update data sources
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There is an issue with PE hosp/ICU admissions around 2023-02-23 or 2023-02-24, where the cumulative value declines for a single day. |
Many provinces replaced active hospitalizations/ICU numbers with hospital/ICU admissions (usually weekly) (#82). These should be added, potentially as
hospitalizations_admissionsandicu_admissions(original idea:hospitalizations_newandicu_new, but this may be confusing). As well,hospitalizationsandicushould probably be changed tohospitalizations_activeandicu_active(or perhaps "current" or "occupancy"; "hospitalizations" should be shortened to "hosp"), but maybe it's too late to change these values.Will also need to add these values to the README and
values.json, although they should be labelled experimental.ae74c46f-dec7-43d6-a42b-86c7242f0868)34f45670-34ed-415c-86a6-e14d77fcf6db)NB admissions archive_ts cumulative values (40d93d2b-5c85-4592-b844-fb78b5ae5cec) ~~ (Has "total hospitalized and "total discharged" values but they are much larger than the cumulative values given in the subsequent reports---probably a definition change, and so it doesn't make sense to report negative cumulative values, but could add as an extra dataset)The text was updated successfully, but these errors were encountered: