Skip to content

Small update to deal with IUPAC ambiguity codes.

Latest
Compare
Choose a tag to compare
@cerebis cerebis released this 23 Oct 10:34
· 65 commits to master since this release

Modelling of base calling errors within Art.py does not currently support ambiguous symbols besides N.

This release adds the following support:

  • informative error reporting when reference sequences contains symbols other than ACGTN.
  • new command line option --convert filters references in memory, converting unsupported symbols to N.
  • --simple-reads option does not model errors and can handle all symbols.