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  1. MiCall MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    Python 14 9

  2. Kive Kive Public

    Archival and automation of bioinformatic pipelines and data

    Python 8 1

  3. aligntools aligntools Public

    A Python library for manipulation of CIGAR, MSA, and other alignment formats.

    Python 6

  4. pyvdrm pyvdrm Public

    Tools for interpreting viral drug resistance mutations

    Python 3 1

  5. MiSeqQCReport MiSeqQCReport Public

    Quality control report for the MiSeq.

    Perl 2

  6. make_tree make_tree Public

    Simple script for drawing phylogenetic trees

    Python 2 1

Repositories

Showing 10 of 57 repositories
  • MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    cfe-lab/MiCall’s past year of commit activity
    Python 14 AGPL-3.0 9 125 5 Updated Dec 27, 2024
  • sds-viewer Public

    Public record of BC CfE Safety Data Sheets (SDS)

    cfe-lab/sds-viewer’s past year of commit activity
    Python 0 0 0 0 Updated Dec 23, 2024
  • CFEIntact Public

    A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

    cfe-lab/CFEIntact’s past year of commit activity
    Python 2 MIT 0 7 0 Updated Dec 11, 2024
  • proviral Public
    cfe-lab/proviral’s past year of commit activity
    Python 0 0 4 2 Updated Dec 11, 2024
  • gotoh Public

    Simple sequence aligner with high-level language bindings.

    cfe-lab/gotoh’s past year of commit activity
    Ruby 0 0 0 0 Updated Dec 5, 2024
  • aligntools Public

    A Python library for manipulation of CIGAR, MSA, and other alignment formats.

    cfe-lab/aligntools’s past year of commit activity
    Python 6 AGPL-3.0 0 0 0 Updated Dec 3, 2024
  • multicsv Public

    A Python library for handling multi-CSV format.

    cfe-lab/multicsv’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 18, 2024
  • react-ferry Public

    Tools for integrating a React frontend with a JSON-based REST API

    cfe-lab/react-ferry’s past year of commit activity
    TypeScript 0 MIT 0 0 1 Updated Sep 12, 2024
  • bblab-server Public

    Useful tools for HIV research from the Brockman and Brumme Lab at SFU

    cfe-lab/bblab-server’s past year of commit activity
    Python 0 1 9 1 Updated Jul 30, 2024
  • cfe-lab.github.io Public

    at the BC Centre for Excellence in HIV/AIDS

    cfe-lab/cfe-lab.github.io’s past year of commit activity
    0 1 0 0 Updated Jul 24, 2024

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