chore: deploy staging <- main #3213
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chore: main->staging
… in curation API (#3177) * feat: surface dataset batch_condition in curation API * resolve merge conflict
* Document the types of links that are supported * Update documentation
* docs: Renaming scExpression to Gene Expression - changing route to gene-expression instead of scExpression
* chore(fe): upgrade to nextjs12 blueprint4 node16 * upgrade packages to resolve vulns * fix(lint): lint stuff * fix(lint): lint stuff * restore css usage * update Dockerfile * clean up css * fix bp4 css change * update docsite image css
* remove access_type form curation API * remove is_allowed check from reshape_for_curation_api * update openapi * Fix the error message when curator is used by not a super curator * fix errors * Move all reshaping collection code into reshape_for_curation_api.
change name to title in dataset change is_primary_data to list of boolean in dataset
- remove .h5ad suffix from uploads and curator tags - check for embedded UUID in curator tag
* fix: backend/Makefile local db improvements, migration README - Rename the targets for loading data and loading schema into local test db - Adapt the commands for the above two scripts to actually work (??) * doc updates * additional doc update
danieljhegeman
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Sep 1, 2022
* fix: remove self example from openapi (#3173) * chore: cherry pick changes from #3172 surface dataset batch_condition in curation API (#3177) * feat: surface dataset batch_condition in curation API * resolve merge conflict * fix: document upload links that are suported (#3176) * Document the types of links that are supported * Update documentation * docs: Renaming scExpression to Gene Expression (#3091) * docs: Renaming scExpression to Gene Expression - changing route to gene-expression instead of scExpression * chore(fe): upgrade to nextjs12 blueprint4 node16 (#3119) * chore(fe): upgrade to nextjs12 blueprint4 node16 * upgrade packages to resolve vulns * fix(lint): lint stuff * fix(lint): lint stuff * restore css usage * update Dockerfile * clean up css * fix bp4 css change * update docsite image css * fix: remove access_type from curation API (#3080) * remove access_type form curation API * remove is_allowed check from reshape_for_curation_api * update openapi * Fix the error message when curator is used by not a super curator * fix errors * Move all reshaping collection code into reshape_for_curation_api. * fix: change the datasets response shape (#3178) change name to title in dataset change is_primary_data to list of boolean in dataset * fix(curation api):Remove h5ad suffix requirements (#3151) - remove .h5ad suffix from uploads and curator tags - check for embedded UUID in curator tag * fix: backend/Makefile local db improvements, migration README (#3029) * fix: backend/Makefile local db improvements, migration README - Rename the targets for loading data and loading schema into local test db - Adapt the commands for the above two scripts to actually work (??) * doc updates * additional doc update * style: remove unused regex and consolidate curator tag logic (#3200) Co-authored-by: Trent Smith <1429913+Bento007@users.noreply.github.com> Co-authored-by: Nayib Gloria <55710092+nayib-jose-gloria@users.noreply.github.com> Co-authored-by: ashin-czi <109984998+ashin-czi@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com> Co-authored-by: Trent Smith <1429913+Bento007@users.noreply.github.com> Co-authored-by: Nayib Gloria <55710092+nayib-jose-gloria@users.noreply.github.com> Co-authored-by: ashin-czi <109984998+ashin-czi@users.noreply.github.com> Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
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